RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NOX1Q9Y5S8 564 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 CSNK1G3Q9Y6M4 447 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 LOC102723532A0A0G2JNH3 316 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SMLR1H3BR10 107 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 GCM2O75603 506 aaPredicted RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 RHOP08100 348 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 MRPL3P09001 348 aaKnown RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 PSMA3P25788 255 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 WNT4P56705 351 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SGCGQ13326 291 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 GNA13Q14344 377 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 NDUFAF5Q5TEU4 345 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 CDK20Q8IZL9 346 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 PROKR2Q8NFJ6 384 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SMG7Q92540 1137 aaKnown RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 TBC1D20Q96BZ9 403 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 DNMT3BQ9UBC3 853 aaKnown RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 TNFRSF10DQ9UBN6 386 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SCN10AQ9Y5Y9 1956 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC5A10A0PJK1 596 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC9A3R1O14745 358 aaPredicted RBP11.24□□□□□ -0.61
MSH6-204ENST00000445503 GNB5O14775 395 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 PPM1DO15297 605 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 HTR2BP41595 481 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 SLC7A9P82251 487 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ID2Q02363 134 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 E2F2Q14209 437 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ACSM5Q6NUN0 579 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 PHC2Q8IXK0 858 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 UBQLNLQ8IYU4 475 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 KLHL36Q8N4N3 616 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 UXS1Q8NBZ7 420 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 ZNF354BQ96LW1 612 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 TMEM38AQ9H6F2 299 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 TM7SF3Q9NS93 570 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 EXTL2Q9UBQ6 330 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 A3GALT2U3KPV4 340 aa11.24□□□□□ -0.61
MSH6-204ENST00000445503 BTN3A3O00478 584 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ETV5P41161 510 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ETV1P50549 477 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 RHAGQ02094 409 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 HENMT1Q5T8I9 393 aaKnown RBP11.23□□□□□ -0.61
MSH6-204ENST00000445503 NOXA1Q86UR1 476 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 VWA5B2Q8N398 1253 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ANKK1Q8NFD2 765 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 C17orf50Q8WW18 174 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 RFKQ969G6 155 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 CDCA4Q9BXL8 241 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 MED28Q9H204 178 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ADAP2Q9NPF8 381 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 CACNA1CQ13936 2221 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 A0A1W2PQ72 361 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 INMT-MINDY4F8WBC2 141 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 PLPP1O14494 284 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 GNSP15586 552 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 VIPR2P41587 438 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 PUM1Q14671 1186 aaKnown RBP eCLIP11.23□□□□□ -0.616e-7■■■□□ 16.1
MSH6-204ENST00000445503 PGBD2Q6P3X8 592 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 UNC5DQ6UXZ4 953 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 OR6T1Q8NGN1 323 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ZNF514Q96K75 400 aaPredicted RBP11.23□□□□□ -0.61
MSH6-204ENST00000445503 SAP130Q9H0E3 1048 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 FBXL12Q9NXK8 326 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 IGLV3-16A0A075B6K0 115 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 DAPL1A0PJW8 107 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ANKRD34BA5PLL1 514 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 PRR23D1E9PI22 279 aaPredicted RBP11.23□□□□□ -0.61
MSH6-204ENST00000445503 ZNF670-ZNF695F2Z2N8 137 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 SSNA1O43805 119 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 HLA-DPB1P04440 258 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 HMGN2P05204 90 aaKnown RBP11.23□□□□□ -0.61
MSH6-204ENST00000445503 PRR23D2P0DMB1 279 aaPredicted RBP11.23□□□□□ -0.61
MSH6-204ENST00000445503 CSF2RAP15509 400 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 CRYBA2P53672 197 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 PRR5P85299 388 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 ILKQ13418 452 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 VN1R5Q7Z5H4 357 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 CCDC190Q86UF4 302 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 KIAA1958Q8N8K9 716 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 OR52I1Q8NGK6 324 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 C16orf58Q96GQ5 468 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 TAS2R7Q9NYW3 318 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 OR1A2Q9Y585 309 aa11.23□□□□□ -0.61
MSH6-204ENST00000445503 PAK4O96013 591 aaPredicted RBP11.22□□□□□ -0.61
MSH6-204ENST00000445503 ADH5P11766 374 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 MMP11P24347 488 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 LSM11P83369 360 aaKnown RBP eCLIP11.22□□□□□ -0.61
MSH6-204ENST00000445503 CAMK1Q14012 370 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 IL20RBQ6UXL0 311 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 LRRTM4Q86VH4 590 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 OR4N5Q8IXE1 308 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 PGBD3Q8N328 593 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 NLGN4YQ8NFZ3 816 aaPredicted RBP11.22□□□□□ -0.61
MSH6-204ENST00000445503 OR4C15Q8NGM1 316 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 GRPEL2Q8TAA5 225 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 METTL2AQ96IZ6 378 aaKnown RBP11.22□□□□□ -0.61
MSH6-204ENST00000445503 CAPNS2Q96L46 248 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 MCHR1Q99705 422 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 F5P12259 2224 aa11.22□□□□□ -0.61
MSH6-204ENST00000445503 HMX3A6NHT5 357 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms