RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 EEF1E1O43324 174 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 ONECUT3O60422 494 aaPredicted RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 C4BPAP04003 597 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZNF84P51523 738 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 INHBCP55103 352 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PON2Q15165 354 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CCL15Q16663 113 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 UHRF2Q96PU4 802 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CAPN10Q9HC96 672 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ABT1Q9ULW3 272 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 CDK14O94921 469 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 HTD2P86397 168 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 P2RY14Q15391 338 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PRAMEF8Q5VWM4 474 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PRAMEF7Q5VXH5 474 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PDZD3Q86UT5 571 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RXFP3Q9NSD7 469 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZMAT5Q9UDW3 170 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 FAM149AA5PLN7 773 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 EOMESO95936 686 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PCGF2P35227 344 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 A0A1W2PPL8 197 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 GPR89AB7ZAQ6 455 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 OR2F2O95006 317 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 GPR89BP0CG08 455 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 MAGP20916 626 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SLC6A8P48029 635 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PPIGQ13427 754 aaKnown RBP eCLIP6.88□□□□□ -1.314e-7■■□□□ 12.8
VPS53-204ENST00000437048 OR2F1Q13607 317 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SLC17A1Q14916 467 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FAM151BQ6UXP7 276 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 LAS2Q8IYD9 372 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TCTE3Q8IZS6 198 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 BRIX1Q8TDN6 353 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 SAMD10Q9BYL1 202 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FZD10Q9ULW2 581 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DVL1O14640 695 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZNF623O75123 536 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 JTBO76095 146 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 HCKP08631 526 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CSF2RAP15509 400 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DVL1P1P54792 670 aaPredicted RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 CPA6Q8N4T0 437 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 KREMEN1Q96MU8 473 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FN3KRPQ9HA64 309 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ACP6Q9NPH0 428 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 AIG1Q9NVV5 245 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 EPHA6Q9UF33 1036 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SPTBN2O15020 2390 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 KIDINS220Q9ULH0 1771 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SPTA1P02549 2419 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CELP19835 753 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 MASP1P48740 699 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 MTPNP58546 118 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ITPK1Q13572 414 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TATDN3Q17R31 274 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FAM124AQ86V42 546 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 NKAIN3Q8N8D7 197 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 OR5H2Q8NGV7 314 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ADARB2Q9NS39 739 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 C17orf112F2Z3M2 114 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ARHGAP33O14559 1287 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DBIP07108 87 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 LRP8Q14114 963 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 HNF4GQ14541 408 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TMEM173Q86WV6 379 aaPredicted RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 C4orf32Q8N8J7 132 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SLC30A7Q8NEW0 376 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PRRG4Q9BZD6 226 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ARHGAP39Q9C0H5 1083 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZCCHC4Q9H5U6 513 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CTPS2Q9NRF8 586 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DTLQ9NZJ0 730 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PCDHB14Q9Y5E9 798 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 LTN1O94822 1766 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FADS1O60427 444 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 LILRB5O75023 590 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SPATA31C1P0DKV0 1188 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FKBP2P26885 142 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZNF574Q6ZN55 896 aaPredicted RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 GTF2H5Q6ZYL4 71 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZNF598Q86UK7 904 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 SCARB1Q8WTV0 552 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 BORCS8Q96FH0 119 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TMEM41AQ96HV5 264 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ZNF558Q96NG5 402 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DNAJC5Q9H3Z4 198 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 STRAPQ9Y3F4 350 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 SLC22A23A1A5C7 686 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 VIPP01282 170 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 MPC1LP0DKB6 136 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RIDAP52758 137 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 EXOSC6Q5RKV6 272 aaKnown RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 C6orf136Q5SQH8 315 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 CES5AQ6NT32 575 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 RAB3CQ96E17 227 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TTPALQ9BTX7 342 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SLC6A14Q9UN76 642 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 A0A1W2PQL4 384 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 ANKRD28O15084 1053 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 124.8 ms