RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NDUFA5Q16718 116 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ITPRIPL2Q3MIP1 535 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ZNF770Q6IQ21 691 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 FUT10Q6P4F1 479 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 C6orf89Q6UWU4 347 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 MFSD7Q6UXD7 560 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 CCDC121Q6ZUS5 278 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 RALGPS2Q86X27 583 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 SERPINA12Q8IW75 414 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 CCDC60Q8IWA6 550 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ODF3L1Q8IXM7 274 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 APCDD1Q8J025 514 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 CRYBG2Q8N1P7 616 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 PRSS35Q8N3Z0 413 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 LEMD2Q8NC56 503 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 SLC16A11Q8NCK7 471 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 DEFB124Q8NES8 71 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 DQX1Q8TE96 717 aaKnown RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 PHLDA1Q8WV24 401 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 DYDC1Q8WWB3 177 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 TSACCQ96A04 125 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ZG16BQ96DA0 208 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 LINGO1Q96FE5 620 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 MBOAT7Q96N66 472 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 NDNQ99608 321 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 LRRC1Q9BTT6 524 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 NUP58Q9BVL2 599 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 GLT8D2Q9H1C3 349 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 VCXQ9H320 206 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 CENPHQ9H3R5 247 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 SLITRK6Q9H5Y7 841 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 C10orf88Q9H8K7 445 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 LY9Q9HBG7 655 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 TRPC7Q9HCX4 862 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ZNF334Q9HCZ1 680 aaPredicted RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 CHST11Q9NPF2 352 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 NRBP2Q9NSY0 501 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 DDX19AQ9NUU7 478 aaKnown RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 RMND1Q9NWS8 449 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 P4HTMQ9NXG6 502 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 PTGFRNQ9P2B2 879 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 POU2F3Q9UKI9 436 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 ADAM28Q9UKQ2 775 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 KLK13Q9UKR3 277 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 SLC7A7Q9UM01 511 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 TNNQ9UQP3 1299 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 RUVBL2Q9Y230 463 aaKnown RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 STRAPQ9Y3F4 350 aaKnown RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 TMED3Q9Y3Q3 217 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 C2CD2Q9Y426 696 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 HBS1LQ9Y450 684 aaKnown RBP3.72□□□□□ -1.81
HMGB3-203ENST00000430118 TIMM22Q9Y584 194 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 FADS3Q9Y5Q0 445 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 UBIAD1Q9Y5Z9 338 aa3.72□□□□□ -1.81
HMGB3-203ENST00000430118 FREM2Q5SZK8 3169 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TRAV18A0A075B6X5 111 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 IGKV6D-21A0A0A0MT36 114 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 IQANK1A0A1B0GTG1 560 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 C2orf92A0A1B0GVN3 265 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TMEM129A0AVI4 362 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 BCLAF3A2AJT9 711 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ARHGAP42A6NI28 874 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 C17orf105B2RV13 164 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ANKRD65E5RJM6 399 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 E9PMD0 336 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 NME6O75414 186 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 OAZ2O95190 189 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PIGNO95427 931 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 APOHP02749 345 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF18P17022 549 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CCNE1P24864 410 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 NR4A2P43354 598 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 MAGEB1P43366 347 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 HOXA1P49639 335 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 MTTPP55157 894 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 RPP38P78345 283 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 RPL24P83731 157 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DR1Q01658 176 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 SLC3A1Q07837 685 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DMPKQ09013 629 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF415Q09FC8 603 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 HSPA14Q0VDF9 509 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 LCP2Q13094 533 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 MSLNQ13421 630 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 KLF9Q13886 244 aaPredicted RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 DPYSQ14117 519 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TRADDQ15628 312 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PSMD5Q16401 504 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 UGP2Q16851 508 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 CEP55Q53EZ4 464 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 HSP90AA5PQ58FG0 334 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TCEAL6Q6IPX3 200 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 FAM171BQ6P995 826 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TRIM65Q6PJ69 517 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PIWIL4Q7Z3Z4 852 aaKnown RBP3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TMEM126BQ8IUX1 230 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 TBC1D10CQ8IV04 446 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 PLD3Q8IV08 490 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 ELMOD2Q8IZ81 293 aa3.71□□□□□ -1.82
HMGB3-203ENST00000430118 LGI2Q8N0V4 545 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms