RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 RPS10P5Q9NQ39 176 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 ABCC13Q9NSE7 274 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 CLIP2Q9UDT6 1046 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 TRIM10Q9UDY6 481 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 TUBGCP4Q9UGJ1 667 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 DNPEPQ9ULA0 475 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 CCPG1Q9ULG6 757 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 NUDCQ9Y266 331 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 RPH3AQ9Y2J0 694 aaPredicted RBP1.96□□□□□ -2.1
PTPRC-208ENST00000427110 ATG4BQ9Y4P1 393 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 CASKIN1Q8WXD9 1431 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 PDS5BQ9NTI5 1447 aa1.96□□□□□ -2.1
PTPRC-208ENST00000427110 PCF11O94913 1555 aaKnown RBP1.96□□□□□ -2.1
PTPRC-208ENST00000427110 DHX57Q6P158 1386 aaKnown RBP1.96□□□□□ -2.1
PTPRC-208ENST00000427110 NESP48681 1621 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SNAPC4Q5SXM2 1469 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 RAD54L2Q9Y4B4 1467 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 PCNX3Q9H6A9 2034 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SUPT6HQ7KZ85 1726 aaKnown RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 FMN1Q68DA7 1419 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 A0A0J9YVX5 310 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 A0A0U1RRA0 63 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 TMEM89A2RUT3 159 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 TRIM49BA6NDI0 452 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 FOXI3A8MTJ6 420 aaPredicted RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ARPC1BO15143 372 aaKnown RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SSX5O60225 188 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 LRP3O75074 770 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 NUDT14O95848 222 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 IGHG1P01857 330 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 RALAP11233 206 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 GAP43P17677 238 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 UCP1P25874 307 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 AKT2P31751 481 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 BRCC3P46736 316 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 NUMBP49757 651 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 RAG2P55895 527 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SLC26A5P58743 744 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 NOP14P78316 857 aaKnown RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 MYBPC1Q00872 1141 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 COX10Q12887 443 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 BNIP1Q12981 228 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 CYLC2Q14093 348 aaPredicted RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ABRAXAS2Q15018 415 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 HAGHQ16775 308 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SHROOM1Q2M3G4 852 aaPredicted RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 HIGD2BQ4VC39 106 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 HERC4Q5GLZ8 1057 aaPredicted RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ZNF506Q5JVG8 444 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ACER2Q5QJU3 275 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SEL1L3Q68CR1 1132 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 CNSTQ6PJW8 725 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 REG3GQ6UW15 175 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 MOB2Q70IA6 237 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 P4HA3Q7Z4N8 544 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 PHC2Q8IXK0 858 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 CENPSQ8N2Z9 138 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 KDM8Q8N371 416 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 GPATCH11Q8N954 259 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 FCGR1BQ92637 280 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 BIRC7Q96CA5 298 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ACCSQ96QU6 501 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 APOOQ9BUR5 198 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 FTHL17Q9BXU8 183 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 KRT23Q9C075 422 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 TMEM231Q9H6L2 316 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 Q9HAA7 133 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 GNB4Q9HAV0 340 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ADGRL4Q9HBW9 690 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 NRN1Q9NPD7 142 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SPASTQ9UBP0 616 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 MIOXQ9UGB7 285 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 CIDEBQ9UHD4 219 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 HOOK1Q9UJC3 728 aaKnown RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 IKZF3Q9UKT9 509 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 SPATA2Q9UM82 520 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 MRPL11Q9Y3B7 192 aaKnown RBP1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ZNF175Q9Y473 711 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 FKBP7Q9Y680 259 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 ARHGEF11O15085 1522 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 CCNB3Q8WWL7 1395 aa1.95□□□□□ -2.1
PTPRC-208ENST00000427110 GAPVD1Q14C86 1478 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ADAMTS12P58397 1594 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GCC2Q8IWJ2 1684 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 IGHV3-16A0A0C4DH30 117 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 TRABD2BA6NFA1 517 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ZNF487B1APH4 448 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 E9PAM4 449 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 PHF1O43189 567 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 STAM2O75886 525 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 SEMA4FO95754 770 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 RENP00797 406 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CXCL10P02778 98 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 HCKP08631 526 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CCDC159P0C7I6 412 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 ETS1P14921 441 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 CYP11B1P15538 503 aa1.94□□□□□ -2.1
PTPRC-208ENST00000427110 GATA1P15976 413 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 MAPK3P27361 379 aaPredicted RBP1.94□□□□□ -2.1
PTPRC-208ENST00000427110 PRDX6P30041 224 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms