RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RPF2Q9H7B2 306 aaKnown RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TPT1P8Q9HAU6 139 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 A0A1W2PP18 115 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 LOC730098B7Z3J9 87 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 H7C2Y5 167 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 AURKAO14965 403 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SEC14L2O76054 403 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PLATP00750 562 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 RPS3P23396 243 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CRABP1P29762 137 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 HMGCS1Q01581 520 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GPR17Q13304 367 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MPPED2Q15777 294 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ANKDD1AQ495B1 522 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 EXOSC6Q5RKV6 272 aaKnown RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PRAMEF8Q5VWM4 474 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PRAMEF7Q5VXH5 474 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GPR149Q86SP6 731 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR4F6Q8NGB9 312 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR4K15Q8NH41 348 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 COG8Q96MW5 612 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF681Q96N22 645 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 COL1A1P02452 1464 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ICE1Q9Y2F5 2266 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 FAM149AA5PLN7 773 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF705EA8MWA4 302 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 M0QX08 132 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SHOX2O60902 331 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CNTN5O94779 1100 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PAK4O96013 591 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MEF2AQ02078 507 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OGDHQ02218 1023 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ID2Q02363 134 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 KCNJ11Q14654 390 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CST6Q15828 149 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 DCAF12Q5T6F0 453 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GPR157Q5UAW9 335 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 EEF1A1P5Q5VTE0 462 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLX4IPQ5VYV7 408 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 VGLL2Q8N8G2 317 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 FAM84AQ96KN4 292 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR5B2Q96R09 309 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR14A2Q96R54 314 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CRB3Q9BUF7 120 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLC19A3Q9BZV2 496 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CAMK2AQ9UQM7 478 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 A0A1W2PPW3 197 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SOWAHBA6NEL2 793 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR5K3A6NET4 321 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 A6NL46 340 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 A8MVM7 634 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 YKT6O15498 198 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MTHFD2P13995 350 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SOWAHAQ2M3V2 549 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 RBM12BQ8IXT5 1001 aaKnown RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR10T2Q8NGX3 314 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TCEAL4Q96EI5 215 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 RBM24Q9BX46 236 aaKnown RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 UBQLN2Q9UHD9 624 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLC7A8Q9UHI5 535 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 LRRC42Q9Y546 428 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PRAMEF26H0Y7S4 382 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MPC1LP0DKB6 136 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ETS2P15036 469 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 KCNE1P15382 129 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLC18A1P54219 525 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 JAM2P57087 298 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR4C11Q6IEV9 310 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GALNT6Q8NCL4 622 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 OR51T1Q8NGJ9 327 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 NEIL3Q8TAT5 605 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 HSH2DQ96JZ2 352 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 BARD1Q99728 777 aaKnown RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SRPK3Q9UPE1 567 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SOCS2O14508 198 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 XPNPEP2O43895 674 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 KLRC4O43908 158 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM225BP0DP42 221 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GNB3P16520 340 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 RHCEP18577 417 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 AK4P27144 223 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PRKXP51817 358 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF367Q7RTV3 350 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SYNPOQ8N3V7 929 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CPEB3Q8NE35 698 aaKnown RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SFXN5Q8TD22 340 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PEX13Q92968 403 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 C12orf42Q96LP6 360 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 DMRTB1Q96MA1 342 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 CDC6Q99741 560 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SSX3Q99909 188 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 GATA5Q9BWX5 397 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 TSPAN10Q9H1Z9 355 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ARNT2Q9HBZ2 717 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 ENAMQ9NRM1 1142 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 SLC39A1Q9NY26 324 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 WDR37Q9Y2I8 494 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 PRELID3BQ9Y3B1 194 aa6.55□□□□□ -1.36
SCN1A-204ENST00000423058 MEGF11A6BM72 1044 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms