RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 OR10G3Q8NGC4 313 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 OR14A16Q8NHC5 309 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 PPP1R14CQ8TAE6 165 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 DYDC1Q8WWB3 177 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 CKAP2Q8WWK9 683 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 NINJ1Q92982 152 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 UCN3Q969E3 161 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 ATP6V1E2Q96A05 226 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 RMND5BQ96G75 393 aaPredicted RBP11.86□□□□□ -0.51
LINC00339-202ENST00000416769 SERINC2Q96SA4 455 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 EHD1Q9H4M9 534 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 NOL11Q9H8H0 719 aaKnown RBP11.86□□□□□ -0.51
LINC00339-202ENST00000416769 STK38LQ9Y2H1 464 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.86□□□□□ -0.51
LINC00339-202ENST00000416769 DOCK7Q96N67 2140 aa11.86□□□□□ -0.51
LINC00339-202ENST00000416769 A0A1W2PS29 197 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 A6NNC1 897 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 TMEM114B3SHH9 223 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 OR7A17O14581 309 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 KLF11O14901 512 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 UGDHO60701 494 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 WDR1O75083 606 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 CLEC3AO75596 197 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 OTCP00480 354 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 P04436 131 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 DRD2P14416 443 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 BGNP21810 368 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 TACR1P25103 407 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 CCNG1P51959 295 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 PKNOX1P55347 436 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 STX4Q12846 297 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 CHIT1Q13231 466 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 LAPTM5Q13571 262 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 DOC2AQ14183 400 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 SLC25A35Q3KQZ1 300 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 PIGGQ5H8A4 983 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 WLSQ5T9L3 541 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 RIPPLY2Q5TAB7 128 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 TRIM40Q6P9F5 258 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 PLXDC2Q6UX71 529 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 RGS9BPQ6ZS82 235 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 RPS27LQ71UM5 84 aaKnown RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 MILR1Q7Z6M3 343 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 L3MBTL4Q8NA19 623 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 GOLM1Q8NBJ4 401 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 CHDHQ8NE62 594 aaPredicted RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 LINC01560Q8TB33 94 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 TRPC4APQ8TEL6 797 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 ZNF75CPQ92670 426 aaPredicted RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 WDR34Q96EX3 536 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 PTCD3Q96EY7 689 aaKnown RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 MAGEB18Q96M61 343 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 JSRP1Q96MG2 331 aaPredicted RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 NSUN5Q96P11 429 aaKnown RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 NT5DC2Q9H857 520 aa11.85□□□□□ -0.51
LINC00339-202ENST00000416769 EML4Q9HC35 981 aaKnown RBP11.85□□□□□ -0.51
LINC00339-202ENST00000416769 A0A1B0GTL3 188 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 PPP6CO00743 305 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 SUSD5O60279 629 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ATE1O95260 518 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 CLDN9O95484 217 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 IGKV3-11P04433 115 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 DNASE1P24855 282 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ATP5A1P25705 553 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 MDH1P40925 334 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 SLC1A6P48664 564 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ZNF136P52737 540 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 DGKQP52824 942 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ABCE1P61221 599 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 IRF8Q02556 426 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 LCP2Q13094 533 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 RCN2Q14257 317 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 POU4F3Q15319 338 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ACSF3Q4G176 576 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 DCST1Q5T197 706 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 C18orf63Q68DL7 685 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 PAMR1Q6UXH9 720 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ZCCHC23Q6ZST2 131 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 VWA5B2Q8N398 1253 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ACOT4Q8N9L9 421 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 DAZLQ92904 295 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 SARAFQ96BY9 339 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 SENP5Q96HI0 755 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ZNF382Q96SR6 550 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 EFCAB11Q9BUY7 163 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 PITHD1Q9GZP4 211 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 COPS7BQ9H9Q2 264 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 THAP1Q9NVV9 213 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 CNOT11Q9UKZ1 510 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 MRPS33Q9Y291 106 aaKnown RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 CHCHD2Q9Y6H1 151 aaPredicted RBP11.84□□□□□ -0.51
LINC00339-202ENST00000416769 ARID1AO14497 2285 aa11.84□□□□□ -0.51
LINC00339-202ENST00000416769 CSPG4Q6UVK1 2322 aa11.83□□□□□ -0.51
LINC00339-202ENST00000416769 ANKDD1BA6NHY2 528 aa11.83□□□□□ -0.52
LINC00339-202ENST00000416769 SYT5O00445 386 aa11.83□□□□□ -0.52
LINC00339-202ENST00000416769 ITM2AO43736 263 aa11.83□□□□□ -0.52
LINC00339-202ENST00000416769 ESRRBO95718 433 aa11.83□□□□□ -0.52
LINC00339-202ENST00000416769 TGFB1P01137 390 aa11.83□□□□□ -0.52
LINC00339-202ENST00000416769 CLPSP04118 112 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms