RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 COLEC12Q5KU26 742 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 C16orf87Q6PH81 154 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 CCDC81Q6ZN84 652 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 AHSA2Q719I0 299 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 IQCHQ86VS3 1027 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 TAGAPQ8N103 731 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 C2orf73Q8N5S3 287 aaPredicted RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 HORMAD2Q8N7B1 307 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 TMEM145Q8NBT3 493 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 C9orf43Q8TAL5 461 aaPredicted RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 SFXN5Q8TD22 340 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 PHF10Q8WUB8 498 aaKnown RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 APOBEC4Q8WW27 367 aaKnown RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 PROX1Q92786 737 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SLC38A4Q969I6 547 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 DHRS1Q96LJ7 313 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 C12orf66Q96MD2 445 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 PRAP1Q96NZ9 151 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 ITPAQ9BY32 194 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 ERVMER34-1Q9H9K5 563 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 HMG20AQ9NP66 347 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SLAMF7Q9NQ25 335 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 LHX9Q9NQ69 397 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 RASSF1Q9NS23 344 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 SIRT3Q9NTG7 399 aaPredicted RBP13.97□□□□□ -0.17
USP4-203ENST00000415188 HEBP2Q9Y5Z4 205 aa13.97□□□□□ -0.17
USP4-203ENST00000415188 HEATR5BQ9P2D3 2071 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 PRR19A6NJB7 356 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 CLDN25C9JDP6 229 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 YKT6O15498 198 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 LDOC1O95751 146 aaPredicted RBP13.96□□□□□ -0.17
USP4-203ENST00000415188 TFPTP0C1Z6 253 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 GABRB1P18505 474 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 OR1E2P47887 323 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 ALDH9A1P49189 494 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 CDC42P60953 191 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 TMED1Q13445 227 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 ZIC1Q15915 447 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 SMN1Q16637 294 aaKnown RBP13.96□□□□□ -0.17
USP4-203ENST00000415188 OR4C11Q6IEV9 310 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 TMEM64Q6YI46 380 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 KANSL1Q7Z3B3 1105 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 C6orf120Q7Z4R8 191 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 MMP21Q8N119 569 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 LINC01555Q8NAE3 123 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 SMYD1Q8NB12 490 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 CREB3L4Q8TEY5 395 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 SLC38A5Q8WUX1 472 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 MOAP1Q96BY2 351 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 HSPBAP1Q96EW2 488 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 KLHDC7BQ96G42 594 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 CRELD1Q96HD1 420 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 TMEM19Q96HH6 336 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 INSM2Q96T92 566 aaPredicted RBP13.96□□□□□ -0.17
USP4-203ENST00000415188 SARGQ9BW04 601 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 CCDC86Q9H6F5 360 aaKnown RBP13.96□□□□□ -0.17
USP4-203ENST00000415188 MBNL1Q9NR56 388 aaKnown RBP13.96□□□□□ -0.17
USP4-203ENST00000415188 TMEM184CQ9NVA4 438 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 IMPAD1Q9NX62 359 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 P2RX2Q9UBL9 471 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 MGAT4BQ9UQ53 548 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 SLC17A4Q9Y2C5 497 aa13.96□□□□□ -0.17
USP4-203ENST00000415188 GOLGA4Q13439 2230 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 RTCAO00442 366 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 FAAHO00519 579 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 TMPRSS11DO60235 418 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 SERPINB7O75635 380 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 MFN2O95140 757 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 ZBTB11O95625 1053 aaPredicted RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 BCHEP06276 602 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 THEGLP0DJG4 465 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 ACP5P13686 325 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 TNFRSF1BP20333 461 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 NTSP30990 170 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 AHRP35869 848 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 UGT2B10P36537 528 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 SSR2P43308 183 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 TSFMP43897 325 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 KHKP50053 298 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 CASP9P55211 416 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 CLDN2P57739 230 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 SGCGQ13326 291 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 GNA13Q14344 377 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 UBE3DQ7Z6J8 389 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 SRFBP1Q8NEF9 429 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 ASB12Q8WXK4 309 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 SLC35G5Q96KT7 338 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 COL21A1Q96P44 957 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 TEFMQ96QE5 360 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 ALPK1Q96QP1 1244 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 FBXO8Q9NRD0 319 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 CNOT2Q9NZN8 540 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 AASSQ9UDR5 926 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 TMCC3Q9ULS5 477 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 CFAP20Q9Y6A4 193 aaKnown RBP13.95□□□□□ -0.18
USP4-203ENST00000415188 LAMA5O15230 3695 aa13.95□□□□□ -0.18
USP4-203ENST00000415188 COL5A1P20908 1838 aaPredicted RBP13.94□□□□□ -0.18
USP4-203ENST00000415188 FEZF1A0PJY2 475 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 EFCAB10A6NFE3 127 aa13.94□□□□□ -0.18
USP4-203ENST00000415188 ZAR1LA6NP61 321 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms