RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ZIM3Q96PE6 472 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TTTY12Q9BZ98 90 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 DEFB127Q9H1M4 99 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CENPHQ9H3R5 247 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 ANKRA2Q9H9E1 313 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 EML4Q9HC35 981 aaKnown RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 MYNNQ9NPC7 610 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 SLC35C2Q9NQQ7 365 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 GIMAP4Q9NUV9 329 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TUBA8Q9NY65 449 aaPredicted RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TINAGQ9UJW2 476 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 TRAF6Q9Y4K3 522 aa13.65□□□□□ -0.22
LIMS4-201ENST00000413601 CHCHD2Q9Y6H1 151 aaPredicted RBP13.65□□□□□ -0.22
LIMS4-201ENST00000413601 NCOA6Q14686 2063 aaPredicted RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 A0A1B0GTH9 108 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 CTIFO43310 598 aaKnown RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 RGS14O43566 566 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 LRATO95237 230 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 CHEK2O96017 543 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 BPGMP07738 259 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 FGF4P08620 206 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 DDCP20711 480 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 PRPH2P23942 346 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 ARRB2P32121 409 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 ETV4P43268 484 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 FBXW4P57775 412 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 KIAA0040Q15053 153 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 NNATQ16517 81 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 NTRK2Q16620 822 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 UGT3A2Q3SY77 523 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 ZNF628Q5EBL2 1059 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 PRAMEF20Q5VT98 475 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 Q6ZPB1 254 aaPredicted RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 Q6ZSR9 355 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 FGD2Q7Z6J4 655 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 EXOC3L1Q86VI1 746 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 PRR22Q8IZ63 422 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 SAMD14Q8IZD0 417 aaPredicted RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 OR52R1Q8NGF1 315 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 OR9A2Q8NGT5 310 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 ZNF675Q8TD23 568 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 KAT2AQ92830 837 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 EGLN2Q96KS0 407 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 NXF5Q9H1B4 397 aaKnown RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 LRTM1Q9HBL6 345 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 PROK2Q9HC23 129 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 C1orf109Q9NX04 203 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 EHD3Q9NZN3 535 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 EXO1Q9UQ84 846 aaKnown RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 ENTPD4Q9Y227 616 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 NPFFR2Q9Y5X5 522 aa13.64□□□□□ -0.23
LIMS4-201ENST00000413601 SPTBN1Q01082 2364 aaKnown RBP13.64□□□□□ -0.23
LIMS4-201ENST00000413601 CAPN14A8MX76 684 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 NPIPB8E9PQR5 432 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 ACOT7O00154 380 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 NME6O75414 186 aaPredicted RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 GLSO94925 669 aaPredicted RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 TACR1P25103 407 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 MPIP34949 423 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 MAGEA5P43359 124 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 EMDP50402 254 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 NRG3P56975 720 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 FOXO1Q12778 655 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CEBPEQ15744 281 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 SH2D4BQ5SQS7 431 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 RGS9BPQ6ZS82 235 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 RNF165Q6ZSG1 346 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 SLC22A16Q86VW1 577 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 TICAM1Q8IUC6 712 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 NUDCD3Q8IVD9 361 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 DDIASQ8IXT1 998 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CLYBLQ8N0X4 340 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 FBXW8Q8N3Y1 598 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 C17orf47Q8NEP4 570 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 TWIST2Q8WVJ9 160 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CCDC120Q96HB5 630 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 METTL2AQ96IZ6 378 aaKnown RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 PKNOX2Q96KN3 472 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 BBS4Q96RK4 519 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 ITPAQ9BY32 194 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 IL1RL2Q9HB29 575 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 MIEF1Q9NQG6 463 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 RYDENQ9NUL5 291 aaKnown RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CNIH4Q9P003 139 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CNOT11Q9UKZ1 510 aaKnown RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 CFL2Q9Y281 166 aa13.63□□□□□ -0.23
LIMS4-201ENST00000413601 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.63□□□□□ -0.23
LIMS4-201ENST00000413601 WDR91A4D1P6 747 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 MYO1GB0I1T2 1018 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 TP53I11O14683 189 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 PIP5K1BO14986 540 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 JUNP05412 331 aaKnown RBP13.62□□□□□ -0.23
LIMS4-201ENST00000413601 ESRRAP11474 423 aaPredicted RBP13.62□□□□□ -0.23
LIMS4-201ENST00000413601 NEFHP12036 1026 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 ABCD3P28288 659 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 PTGS2P35354 604 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 SERPINB4P48594 390 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 KCNJ2P63252 427 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 RPS6KA2Q15349 733 aa13.62□□□□□ -0.23
LIMS4-201ENST00000413601 GALNTL6Q49A17 601 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms