RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PAK1IP1Q9NWT1 392 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 C5AR2Q9P296 337 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CPNE7Q9UBL6 633 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 NDOR1Q9UHB4 597 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PSORS1C1Q9UIG5 152 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PILRAQ9UKJ1 303 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FBXW2Q9UKT8 454 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 RNF6Q9Y252 685 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 DSPPQ9NZW4 1301 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 A0A0J9YY10 115 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 EFCAB10A6NFE3 127 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ZAR1LA6NP61 321 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PCDH17O14917 1159 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PGRMC2O15173 223 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 XPNPEP2O43895 674 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UGT2B17O75795 530 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 GABARAPO95166 117 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 LGI1O95970 557 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 RECKO95980 971 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 HMGN2P05204 90 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 OSMP13725 252 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 GSTM3P21266 225 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CPN2P22792 545 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CRISP1P54107 249 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 RPS26P62854 115 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 SKP1P63208 163 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 TBCEQ15813 527 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 MOGQ16653 247 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FRMPD2BQ6IN97 320 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 USP53Q70EK8 1073 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 OOSP2Q86WS3 158 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CCDC116Q8IYX3 515 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 AQP11Q8NBQ7 271 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FAM46DQ8NEK8 389 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 NUP43Q8NFH3 380 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 OR4K14Q8NGD5 310 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 OR52J3Q8NH60 311 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PRRC1Q96M27 445 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 MS4A4EQ96PG1 132 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FUNDC2Q9BWH2 189 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 POLR2J2Q9GZM3 115 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 RACGAP1Q9H0H5 632 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 POLR2J3Q9H1A7 115 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 SERHL2Q9H4I8 314 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ACOT13Q9NPJ3 140 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 GIN1Q9NXP7 522 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 KLHL28Q9NXS3 571 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 SLC13A4Q9UKG4 626 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 NDRG2Q9UN36 371 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 IFT52Q9Y366 437 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 A0A0G2JN53 185 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 SPTY2D1-AS1A0A0U1RR47 76 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 BLACEA4D250 179 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 CLDN24A6NM45 220 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 H0Y8X5 98 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 LAMTOR5O43504 91 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 EML2O95834 649 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 ZNF888P0CJ79 500 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 PIPP12273 146 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 TNFRSF1BP20333 461 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 ELAVL4P26378 380 aaKnown RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 PRKAR1BP31321 381 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 LIM2P55344 173 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 RAB8AP61006 207 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 SNRPGP62308 76 aaKnown RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 GPR18Q14330 331 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 SYPL1Q16563 259 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 RPS26P11Q5JNZ5 115 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 KLHL35Q6PF15 583 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 ZC3H14Q6PJT7 736 aaKnown RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 RNF44Q7L0R7 432 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 SZRD1Q7Z422 152 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 CCDC71Q8IV32 467 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 DNAJC22Q8N4W6 341 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 BAHD1Q8TBE0 780 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 HMGB4Q8WW32 186 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 APH1BQ8WW43 257 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 GAB3Q8WWW8 586 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 NIPSNAP1Q9BPW8 284 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 COPS4Q9BT78 406 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 TMEM121BQ9BXQ6 578 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-205ENST00000410093 CHRDQ9H2X0 955 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 ANKHQ9HCJ1 492 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 CLN6Q9NWW5 311 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 KCMF1Q9P0J7 381 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 ERVK-18Q9QC07 812 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 DAPP1Q9UN19 280 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 SLC22A7Q9Y694 548 aa12.77□□□□□ -0.37
LIMS1-205ENST00000410093 A0A087WV62 115 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 OR6C74A6NCV1 312 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 C4orf51C9J302 202 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 J3KTA2 159 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 FFAR1O14842 300 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 PPM1DO15297 605 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 IGHV4-34P06331 123 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 CDK1P06493 297 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 CTSEP14091 401 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 ALOX12P18054 663 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 GABRB1P18505 474 aa12.76□□□□□ -0.37
LIMS1-205ENST00000410093 MAGP20916 626 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms