RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 MEP1AQ16819 746 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 MFSD12Q6NUT3 480 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 FAM111BQ6SJ93 734 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 SLC5A8Q8N695 610 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 TMEM52Q8NDY8 209 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 CHDHQ8NE62 594 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 RSPO3Q9BXY4 272 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 GIN1Q9NXP7 522 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 MUTYHQ9UIF7 546 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 KCND3Q9UK17 655 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 GMPPBQ9Y5P6 360 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 TP53BP1Q12888 1972 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 A0A1B0GVT2 93 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 A8MVJ9 347 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 FAM227AF5H4B4 570 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 OR6B1O95007 311 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 ATP1B1P05026 303 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 LIMS1P48059 325 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 NPRL3Q12980 569 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 TOP3AQ13472 1001 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 RAPSNQ13702 412 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 ZNF628Q5EBL2 1059 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 C6orf141Q5SZD1 244 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 NIPAL1Q6NVV3 410 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 CDC73Q6P1J9 531 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 MAMSTRQ6ZN01 415 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 OLIG3Q7RTU3 272 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 C16orf62Q7Z3J2 963 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 VANGL1Q8TAA9 524 aaPredicted RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 ADAMTS16Q8TE57 1224 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 NCSTNQ92542 709 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 ZDHHC12Q96GR4 267 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 TRNT1Q96Q11 434 aaKnown RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 APOL4Q9BPW4 351 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 RAB33BQ9H082 229 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 PAPOLBQ9NRJ5 636 aaKnown RBP17.78■□□□□ 0.44
USP39-202ENST00000409025 SOHLH2Q9NX45 425 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 LRIT1Q9P2V4 623 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 PLCL2Q9UPR0 1127 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 HSPE1-MOB4S4R3N1 261 aa17.78■□□□□ 0.44
USP39-202ENST00000409025 CHST10O43529 356 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 SLITRK5O94991 958 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 CCNB2O95067 398 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 IL7RP16871 459 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 ALDH4A1P30038 563 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 GFERP55789 205 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 IL5RAQ01344 420 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 CTU2Q2VPK5 515 aaKnown RBP17.77■□□□□ 0.44
USP39-202ENST00000409025 FAM214AQ32MH5 1076 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 COLEC12Q5KU26 742 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 DEF8Q6ZN54 512 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 RBM44Q6ZP01 1051 aaKnown RBP17.77■□□□□ 0.44
USP39-202ENST00000409025 TAGAPQ8N103 731 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 DGCR14Q96DF8 476 aaKnown RBP17.77■□□□□ 0.44
USP39-202ENST00000409025 PSD2Q9BQI7 771 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 GABARAPL3Q9BY60 117 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 ERVMER34-1Q9H9K5 563 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 RHCGQ9UBD6 479 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 EPHA6Q9UF33 1036 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 BLOC1S6Q9UL45 172 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 SLC9A8Q9Y2E8 581 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 POFUT2Q9Y2G5 429 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 HCN4Q9Y3Q4 1203 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 CSNK1G3Q9Y6M4 447 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 RNF215Q9Y6U7 377 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 THADAQ6YHU6 1953 aa17.77■□□□□ 0.44
USP39-202ENST00000409025 TRIOO75962 3097 aa17.77■□□□□ 0.43
USP39-202ENST00000409025 PCDH17O14917 1159 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 NT5EP21589 574 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 EEF1B2P24534 225 aaKnown RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 TCTN3Q6NUS6 607 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 TSSK4Q6SA08 328 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 SLC35A4Q96G79 324 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 AHCYL2Q96HN2 611 aaKnown RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 ALPK1Q96QP1 1244 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 CD180Q99467 661 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 PINK1Q9BXM7 581 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 ZNF556Q9HAH1 456 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 PDE7BQ9NP56 450 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 NDRG4Q9ULP0 352 aaKnown RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 C19orf53Q9UNZ5 99 aaPredicted RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 A0A087WV62 115 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 A0A0A6YYC8 382 aaPredicted RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 CCDC163A0A0D9SF12 145 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 I3L1I5 382 aaPredicted RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 FFAR1O14842 300 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 CASC3O15234 703 aaKnown RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 CRHBPP24387 322 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 HOXA6P31267 233 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 ESRRGP62508 458 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 HPCAP84074 193 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 CNPY1Q3B7I2 92 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 BORAQ6PGQ7 559 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 SHISA5Q8N114 240 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 MAFAQ8NHW3 353 aaPredicted RBP17.76■□□□□ 0.43
USP39-202ENST00000409025 FBLIM1Q8WUP2 373 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 SLC9A6Q92581 669 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 ZNF285Q96NJ3 590 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 CHRNA10Q9GZZ6 450 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 SLC38A1Q9H2H9 487 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms