RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 MED16Q9Y2X0 877 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 PCDHA9Q9Y5H5 950 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 NPIPA5A0A0B4J1W7 369 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 LRIT2A6NDA9 550 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 NPIPA7E9PJI5 369 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 BLOC1S5-TXNDC5H3BN57 136 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 FRS3O43559 492 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 KIF1CO43896 1103 aaKnown RBP8.58□□□□□ -1.04
LIG4-202ENST00000405925 MPZL2O60487 215 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 SOX30O94993 753 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 NPIPA8P0DM63 369 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 KCNAB1Q14722 419 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 ATP6AP1Q15904 470 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 CCNJQ5T5M9 372 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 FAM111BQ6SJ93 734 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 OR52R1Q8NGF1 315 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 ASB12Q8WXK4 309 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 COPS4Q9BT78 406 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 ACSS1Q9NUB1 689 aaPredicted RBP8.58□□□□□ -1.04
LIG4-202ENST00000405925 GMPR2Q9P2T1 348 aaKnown RBP8.58□□□□□ -1.04
LIG4-202ENST00000405925 EFCAB10A6NFE3 127 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 M0R3H8 397 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 LCMT2O60294 686 aaKnown RBP8.58□□□□□ -1.04
LIG4-202ENST00000405925 H6PDO95479 791 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 HMGN1P05114 100 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 NUDT7P0C024 238 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 ITGA3P26006 1051 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 TEAD1P28347 426 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 VASPP50552 380 aaPredicted RBP8.58□□□□□ -1.04
LIG4-202ENST00000405925 RPS6KA3P51812 740 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 KCNAB2Q13303 367 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 FAM219BQ5XKK7 198 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 LINC00471Q8N535 108 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 C7orf57Q8NEG2 295 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 CADM4Q8NFZ8 388 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 OR8J2Q8NGG1 315 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 OR5T3Q8NGG3 340 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 CREB3L4Q8TEY5 395 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 CHTF18Q8WVB6 975 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 DIO2Q92813 273 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 TP53INP1Q96A56 240 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 PIP5K1AQ99755 562 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 ULBP3Q9BZM4 244 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.58□□□□□ -1.047e-8■■■■■ 33.5
LIG4-202ENST00000405925 TOR3AQ9H497 397 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 SNX11Q9Y5W9 270 aa8.58□□□□□ -1.04
LIG4-202ENST00000405925 C2orf92A0A1B0GVN3 265 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 RCBTB2O95199 551 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 GIMD1P0DJR0 217 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 DBTP11182 482 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 NME1P15531 152 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 CA5AP35218 305 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CDKN2CP42773 168 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 ZNF41P51814 821 aaPredicted RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 FZD2Q14332 565 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CPZQ66K79 652 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 KLHDC8BQ8IXV7 354 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 PJA1Q8NG27 643 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 OR10H4Q8NGA5 316 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 OR51A7Q8NH64 312 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SLC22A8Q8TCC7 542 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 UTP4Q969X6 686 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 TM4SF18Q96CE8 201 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FBXL20Q96IG2 436 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 TRIM2Q9C040 744 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 NUAK2Q9H093 628 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SLITRK2Q9H156 845 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 KLHL31Q9H511 634 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 MTHFD2LQ9H903 347 aaPredicted RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 TMPRSS11EQ9UL52 423 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 COMMD3-BMI1R4GMX3 469 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 A0A0G2JPF8 293 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FAM25AB3EWG3 89 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FAM25CB3EWG5 89 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FAM25GB3EWG6 89 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 HNRNPCL3B7ZW38 293 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 TLX3O43711 291 aaPredicted RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 DBIP07108 87 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 HNRNPCL4P0DMR1 293 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 IL12AP29459 219 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 LTBRP36941 435 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 TALDO1P37837 337 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FOLR3P41439 243 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SLC9A3P48764 834 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 BLVRAP53004 296 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 RAB38P57729 211 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 YBX1P67809 324 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 MYBPC1Q00872 1141 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 FGL2Q14314 439 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 LTB4RQ15722 352 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 EXOC3L2Q2M3D2 409 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 ZNF750Q32MQ0 723 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 IQCCQ4KMZ1 466 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 LIN52Q52LA3 116 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 SLC35F1Q5T1Q4 408 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 RBM44Q6ZP01 1051 aaKnown RBP8.57□□□□□ -1.04
LIG4-202ENST00000405925 SNX33Q8WV41 574 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 C1GALT1C1Q96EU7 318 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 CCDC115Q96NT0 180 aa8.57□□□□□ -1.04
LIG4-202ENST00000405925 PCED1AQ9H1Q7 454 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms