RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 COPS7AQ9UBW8 275 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 ACSL6Q9UKU0 697 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 CFL2Q9Y281 166 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 URB1O60287 2271 aaKnown RBP13.29□□□□□ -0.28
SKA1-202ENST00000398452 CROCCQ5TZA2 2017 aa13.29□□□□□ -0.28
SKA1-202ENST00000398452 VSTM2BA6NLU5 285 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 A8MUA0 341 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 C17orf105B2RV13 164 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 AGR2O95994 175 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 RAB40ALP0C0E4 278 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 TCN1P20061 433 aaPredicted RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 KHKP50053 298 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 KCNJ2P63252 427 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 MRPS35P82673 323 aaKnown RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 MAP4K2Q12851 820 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 BNIP2Q12982 314 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 GAB1Q13480 694 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 ZNF628Q5EBL2 1059 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 C8orf82Q6P1X6 216 aaPredicted RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 ERICH5Q6P6B1 374 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 RNF130Q86XS8 419 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 IL22RA1Q8N6P7 574 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 RNF148Q8N7C7 305 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 OR2T12Q8NG77 320 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 OR10A6Q8NH74 314 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 JADE3Q92613 823 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 TSLPQ969D9 159 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 CCDC124Q96CT7 223 aaKnown RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 NEURL3Q96EH8 262 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 LRGUKQ96M69 825 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 SLC46A1Q96NT5 459 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 CPPED1Q9BRF8 314 aaPredicted RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 NRSN2Q9GZP1 204 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 CXorf21Q9HAI6 301 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 SIRT3Q9NTG7 399 aaPredicted RBP13.28□□□□□ -0.28
SKA1-202ENST00000398452 CMTM6Q9NX76 183 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 ABCD2Q9UBJ2 740 aa13.28□□□□□ -0.28
SKA1-202ENST00000398452 ANKRD11Q6UB99 2663 aaPredicted RBP13.27□□□□□ -0.28
SKA1-202ENST00000398452 TRBV5-3A0A0A0MS03 114 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 TEX51A0A1B0GUA7 166 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 A0A1W2PS29 197 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 TCRBV16S1A1N1A0A5B0 115 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PMS2P1A4D2B8 440 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 DUXAA6NLW8 204 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 C21orf140B9A014 251 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 C5orf58C9J3I9 102 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 ANKRD65E5RJM6 399 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 NME4O00746 187 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PLOD3O60568 738 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PRAMEF2O60811 474 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PDE5AO76074 875 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 SOX30O94993 753 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 GPX2P18283 190 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 MATN1P21941 496 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PTPN6P29350 595 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PTGER1P34995 402 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 DUSP2Q05923 314 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 GNA13Q14344 377 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 RGNQ15493 299 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PRICKLE4Q2TBC4 344 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.27□□□□□ -0.29
SKA1-202ENST00000398452 GCNT6Q5T4J0 391 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 ATAD3BQ5T9A4 648 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 C1orf146Q5VVC0 180 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 SAXO2Q658L1 398 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 CPZQ66K79 652 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 FAM198BQ6UWH4 519 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 SERPINA11Q86U17 422 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 MSRB3Q8IXL7 192 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 C10orf67Q8IYJ2 551 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 CLEC4FQ8N1N0 589 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 ENDOVQ8N8Q3 282 aaKnown RBP13.27□□□□□ -0.29
SKA1-202ENST00000398452 OR7G2Q8NG99 324 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 OR7G1Q8NGA0 311 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 ADAMTS15Q8TE58 950 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 NCLNQ969V3 563 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 NXPE2Q96DL1 559 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 SPSB2Q99619 263 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 LPAR4Q99677 370 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 GPR87Q9BY21 358 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 MUC13Q9H3R2 512 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PIF1Q9H611 641 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 CACYBPQ9HB71 228 aaKnown RBP13.27□□□□□ -0.29
SKA1-202ENST00000398452 EQTNQ9NQ60 294 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 NPDC1Q9NQX5 325 aaPredicted RBP13.27□□□□□ -0.29
SKA1-202ENST00000398452 EXD2Q9NVH0 621 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 MAT2BQ9NZL9 334 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 PRODH2Q9UF12 536 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 KCND3Q9UK17 655 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 C19orf53Q9UNZ5 99 aaPredicted RBP13.27□□□□□ -0.29
SKA1-202ENST00000398452 FARSAQ9Y285 508 aaKnown RBP13.27□□□□□ -0.29
SKA1-202ENST00000398452 PCDHGB3Q9Y5G1 929 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 SPEGQ15772 3267 aa13.27□□□□□ -0.29
SKA1-202ENST00000398452 IGKV3D-11A0A0A0MRZ8 115 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 ELOVL7A1L3X0 281 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 TRABD2BA6NFA1 517 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 OR2W5A6NFC9 320 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 FAM220BPB1ANY3 271 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 HSD17B1P14061 328 aa13.26□□□□□ -0.29
SKA1-202ENST00000398452 DLSTP36957 453 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms