RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CTHRC1Q96CG8 243 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 RNF145Q96MT1 663 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 OR7D2Q96RA2 312 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 ACTRT3Q9BYD9 372 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 STOML1Q9UBI4 398 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 MKL2Q9ULH7 1088 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 ANGPT4Q9Y264 503 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 LOXL2Q9Y4K0 774 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 TFPTP0C1Z6 253 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 FOXL2P58012 376 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 RPS26P11Q5JNZ5 115 aaPredicted RBP25.06■■□□□ 1.6
MSX1-201ENST00000382723 DHRS13Q6UX07 377 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 QSOX2Q6ZRP7 698 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 LILRA2Q8N149 483 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 MIPOL1Q8TD10 442 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 TMEM19Q96HH6 336 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 PKP2Q99959 881 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 ARMC1Q9NVT9 282 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 THUMPD1Q9NXG2 353 aaKnown RBP25.06■■□□□ 1.6
MSX1-201ENST00000382723 KCNE3Q9Y6H6 103 aa25.06■■□□□ 1.6
MSX1-201ENST00000382723 SLC28A2O43868 658 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 CPNE3O75131 537 aaKnown RBP25.05■■□□□ 1.6
MSX1-201ENST00000382723 MT-ND1P03886 318 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 TNNI3P19429 210 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 PGDP52209 483 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 EFNA3P52797 238 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 RHAGQ02094 409 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 MAP4K2Q12851 820 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 SYPL1Q16563 259 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 ISXQ2M1V0 245 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 INTS11Q5TA45 600 aaKnown RBP25.05■■□□□ 1.6
MSX1-201ENST00000382723 REEP3Q6NUK4 255 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 MED25Q71SY5 747 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 DEFB124Q8NES8 71 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 LRTOMTQ8WZ04 291 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 SLC9A6Q92581 669 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 UGT2B28Q9BY64 529 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 PNO1Q9NRX1 252 aaKnown RBP25.05■■□□□ 1.6
MSX1-201ENST00000382723 P2RX2Q9UBL9 471 aa25.05■■□□□ 1.6
MSX1-201ENST00000382723 LOC105378220A0A1B0GUY1 285 aaPredicted RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 PRAMEF27A3QJZ7 478 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 TMEM247A6NEH6 219 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 HRKO00198 91 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 PTDSS1P48651 473 aaKnown RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 OCA2Q04671 838 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 ZNF267Q14586 743 aaPredicted RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 FAM98BQ52LJ0 330 aaKnown RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 ZNF385CQ66K41 422 aaPredicted RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 STT3BQ8TCJ2 826 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 OLAHQ9NV23 265 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 SAMD4AQ9UPU9 718 aaKnown RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 COL27A1Q8IZC6 1860 aaPredicted RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 CSO75390 466 aaKnown RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 OPN1SWP03999 348 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 NR2F1P10589 423 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 RORAP35398 523 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 MAGEA8P43361 318 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 MAN2A2P49641 1150 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 MYBPC3Q14896 1274 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 MAPK11Q15759 364 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 NKG7Q16617 165 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 CDCP2Q5VXM1 449 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 LCN10Q6JVE6 187 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 LGI4Q8N135 537 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 EID3Q8N140 333 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 SLC16A11Q8NCK7 471 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 OR52R1Q8NGF1 315 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 ADAMTS15Q8TE58 950 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 NRG4Q8WWG1 115 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 SLC47A1Q96FL8 570 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 CNPPD1Q9BV87 410 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 VN1R1Q9GZP7 353 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 IFT80Q9P2H3 777 aaPredicted RBP25.04■■□□□ 1.6
MSX1-201ENST00000382723 RPS6KA6Q9UK32 745 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 PCDHGA1Q9Y5H4 931 aa25.04■■□□□ 1.6
MSX1-201ENST00000382723 A8MUA0 341 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 B4E171 279 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 MEN1O00255 615 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 FOXD2O60548 495 aaPredicted RBP25.03■■□□□ 1.6
MSX1-201ENST00000382723 CBX7O95931 251 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 MT-CO3P00414 261 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 TSPAN7P41732 249 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 CRYBA2P53672 197 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 MAPK10P53779 464 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 CHRNB3Q05901 458 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 NSDHLQ15738 373 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 LRRC74BQ6ZQY2 392 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 SLC30A8Q8IWU4 369 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 ANKFN1Q8N957 763 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 PYURFQ96I23 114 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 ULBP3Q9BZM4 244 aa25.03■■□□□ 1.6
MSX1-201ENST00000382723 C6orf203Q9P0P8 240 aaPredicted RBP25.03■■□□□ 1.6
MSX1-201ENST00000382723 IGKV3D-11A0A0A0MRZ8 115 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 ZGLP1P0C6A0 271 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 S1PR1P21453 382 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 SSTR4P31391 388 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 ETV5P41161 510 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 BIKQ13323 160 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 CYBRD1Q53TN4 286 aa25.02■■□□□ 1.6
MSX1-201ENST00000382723 CDC73Q6P1J9 531 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms