RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 CCDC88CQ9P219 2028 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 HELZP42694 1942 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 CXorf51AA0A1B0GTR3 108 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 CHURC1-FNTBB4DL54 471 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 SCAMP2O15127 329 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 SCN2BO60939 215 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 CKMP06732 381 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 STOMP27105 288 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 HLA-FP30511 346 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 RPS13P62277 151 aaKnown RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 SEC23BQ15437 767 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 ASTLQ6HA08 431 aaPredicted RBP13.12□□□□□ -0.31
SDC1-202ENST00000381150 UXS1Q8NBZ7 420 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 OR11H4Q8NGC9 324 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 RDH14Q9HBH5 336 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 ENAMQ9NRM1 1142 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 NDUFB11Q9NX14 153 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 C5AR2Q9P296 337 aa13.12□□□□□ -0.31
SDC1-202ENST00000381150 ZAR1LA6NP61 321 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 SHOXO15266 292 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 IL1AP01583 271 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 AOAHP28039 575 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 ZNF385BQ569K4 471 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 TRIM40Q6P9F5 258 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 C11orf96Q7Z7L8 435 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 MMP21Q8N119 569 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 NANOGP1Q8N7R0 232 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 BTN2A2Q8WVV5 523 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 ZBP1Q9H171 429 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 SERHL2Q9H4I8 314 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 MCCC2Q9HCC0 563 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 MIEF1Q9NQG6 463 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 HS3ST2Q9Y278 367 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 A0A1W2PPK0 400 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 LEFTY2O00292 366 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 DVL2O14641 736 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 LANCL1O43813 399 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 IGSF6O95976 241 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 PLATP00750 562 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 DNASE1P24855 282 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 PCGF2P35227 344 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 NTRK2Q16620 822 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 MLIPQ5VWP3 458 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 BICRALQ6AI39 1079 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 FAM92BQ6ZTR7 304 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 TPRG1Q6ZUI0 275 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 KCTD20Q7Z5Y7 419 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 CMTM8Q8IZV2 173 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 SAMD12Q8N8I0 201 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 PPCDCQ96CD2 204 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 TRAF4Q9BUZ4 470 aaPredicted RBP13.11□□□□□ -0.31
SDC1-202ENST00000381150 NLNQ9BYT8 704 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 SMG9Q9H0W8 520 aaKnown RBP13.11□□□□□ -0.31
SDC1-202ENST00000381150 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.11□□□□□ -0.31
SDC1-202ENST00000381150 KCTD5Q9NXV2 234 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 ENPP4Q9Y6X5 453 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 SPEGQ15772 3267 aa13.11□□□□□ -0.31
SDC1-202ENST00000381150 A0A1W2PRU2 124 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 LGALS8O00214 317 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 GATBO75879 557 aaKnown RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 IFNA14P01570 189 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CD3GP09693 182 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 AGFG1P52594 562 aaKnown RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 PRKAG1P54619 331 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 WDR5P61964 334 aaKnown RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 PPP3R1P63098 170 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 MLLT11Q13015 90 aaPredicted RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 GPR176Q14439 515 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CRB2Q5IJ48 1285 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 BRAT1Q6PJG6 821 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CEACAM20Q6UY09 585 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 HSDL2Q6YN16 418 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 ZNF730Q6ZMV8 503 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 METTL3Q86U44 580 aaKnown RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 PROKR2Q8NFJ6 384 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 OR52I1Q8NGK6 324 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 PRR14Q9BWN1 585 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 IGLV3-16A0A075B6K0 115 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 A0A1W2PRG6 482 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 OSMP13725 252 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 SERPINA4P29622 427 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CCR2P41597 374 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 MAP2K6P52564 334 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 ARHGDIBP52566 201 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 METTL2BQ6P1Q9 378 aaKnown RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 OR2T35Q8NGX2 323 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 HMGB4Q8WW32 186 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 AIFM2Q9BRQ8 373 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 GPATCH2Q9NW75 528 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 TRPC4Q9UBN4 977 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 ZNF282Q9UDV7 671 aaPredicted RBP13.1□□□□□ -0.31
SDC1-202ENST00000381150 ENOPH1Q9UHY7 261 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CCL26Q9Y258 94 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 RAB36O95755 333 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 PEPDP12955 493 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 ZNF30P17039 623 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 ETV3P41162 512 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CCR6P51684 374 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 LIM2P55344 173 aa13.1□□□□□ -0.31
SDC1-202ENST00000381150 CLDN20P56880 219 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms