RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 A0A096LPI6 279 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 KCNJ9Q92806 393 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 TOMM40LQ969M1 308 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 SCRN2Q96FV2 425 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 ST6GALNAC5Q9BVH7 336 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 ADAM18Q9Y3Q7 739 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 DUX1O43812 170 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 DNASE1P24855 282 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 MAP2K3P46734 347 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 CAMLGP49069 296 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 CAV3P56539 151 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 SLC10A2Q12908 348 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 OR5B12Q96R08 314 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 CNN2Q99439 309 aaKnown RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 PMM2O15305 246 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF254O75437 659 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 SORBS2O94875 1100 aaKnown RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 PTPN6P29350 595 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 GALNT1Q10472 559 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 TUBB3Q13509 450 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 GARNL3Q5VVW2 1013 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 METTL2BQ6P1Q9 378 aaKnown RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 FAM43BQ6ZT52 329 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 WDR53Q7Z5U6 358 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-201ENST00000375820 IL17RCQ8NAC3 791 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 CREB3L1Q96BA8 519 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 IGSF21Q96ID5 467 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 BCL9LQ86UU0 1499 aa13.07□□□□□ -0.32
COL4A1-201ENST00000375820 MDFIC2A0A1B0GVS7 189 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 CD79AP11912 226 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 MAOBP27338 520 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 RAB28P51157 221 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 FAM214AQ32MH5 1076 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 DENND1AQ8TEH3 1009 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 THRSPQ92748 146 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 BADQ92934 168 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 FAM71F1Q96KD3 344 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 MTG2Q9H4K7 406 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 MRM3Q9HC36 420 aaKnown RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 SACM1LQ9NTJ5 587 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ERCC1P07992 297 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 STK11Q15831 433 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 SSX2Q16385 188 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 SYT14Q8NB59 555 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 TSPEARQ8WU66 669 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF382Q96SR6 550 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 INPP5KQ9BT40 448 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 RBM24Q9BX46 236 aaKnown RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 DCCP43146 1447 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 SDHDO14521 159 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 AGPAT2O15120 278 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 CAPNS1P04632 268 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 AMY2AP04746 511 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 UGT2B10P36537 528 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 UBE2NP61088 152 aaKnown RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 TECRLQ5HYJ1 363 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 C6P13671 934 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF136P52737 540 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ALDH16A1Q8IZ83 802 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 LILRB2Q8N423 598 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 FAM83CQ9BQN1 747 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 URM1Q9BTM9 101 aaKnown RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 H0YJX3 145 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 RASAL1O95294 804 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 PIGRP01833 764 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 CAPN3P20807 821 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 NCS1P62166 190 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ELP2Q6IA86 826 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 UGT2A3Q6UWM9 527 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF551Q7Z340 670 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-201ENST00000375820 OR51T1Q8NGJ9 327 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF778Q96MU6 729 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 PCTPQ9UKL6 214 aa13.06□□□□□ -0.32
COL4A1-201ENST00000375820 VSTM2BA6NLU5 285 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 ADGRB1O14514 1584 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 IL7P13232 177 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 APEHP13798 732 aaKnown RBP13.05□□□□□ -0.32
COL4A1-201ENST00000375820 KCNE1P15382 129 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 CD34P28906 385 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 DNAJB13P59910 316 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 CLCA4Q14CN2 919 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 TMEM35AQ53FP2 167 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 MEDAGQ5VYS4 303 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 TRAM1L1Q8N609 369 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF384Q8TF68 577 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 PRDM9Q9NQV7 894 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 ARMC1Q9NVT9 282 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 B4GALT7Q9UBV7 327 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 VDAC3Q9Y277 283 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 OR6C6A6NF89 314 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 DIRAS3O95661 229 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 OR8U9P0C7N5 309 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 PCSK2P16519 638 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 GPR143P51810 404 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 SCAPQ12770 1279 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 KCNC3Q14003 757 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 RAB11BQ15907 218 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 NTRK2Q16620 822 aa13.05□□□□□ -0.32
COL4A1-201ENST00000375820 ZNF829Q3KNS6 432 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms