RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MYL2P10916 166 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 DRD2P14416 443 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ENDOUP21128 410 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 NUP107P57740 925 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 HMGCS1Q01581 520 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 PMPCAQ10713 525 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 DUSP8Q13202 625 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 SPIN4Q56A73 249 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ZNF585AQ6P3V2 769 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ZYG11AQ6WRX3 759 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 TDRPQ86YL5 185 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 LILRB4Q8NHJ6 448 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 UBLCP1Q8WVY7 318 aaPredicted RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 C11orf24Q96F05 449 aaPredicted RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 APIPQ96GX9 242 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 JSRP1Q96MG2 331 aaPredicted RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 KCNA7Q96RP8 456 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 SPOCK3Q9BQ16 436 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 TRIM8Q9BZR9 551 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ENKD1Q9H0I2 346 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 NXF5Q9H1B4 397 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 EXO5Q9H790 373 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 L2HGDHQ9H9P8 463 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 PPCSQ9HAB8 311 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 B4GALT7Q9UBV7 327 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 BCAP29Q9UHQ4 241 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 UTS2RQ9UKP6 389 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ACAD8Q9UKU7 415 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 DLGAP4Q9Y2H0 992 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 ZNF780BQ9Y6R6 833 aa19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 PHF3Q92576 2039 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-201ENST00000373602 PCDH7O60245 1069 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 CBX7O95931 251 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 PROCP04070 461 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 IL3P08700 152 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ABCD3P28288 659 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 CHRNB4P30926 498 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 NAA20P61599 178 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ACSM2AQ08AH3 577 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 EXOSC7Q15024 291 aaKnown RBP19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 TMEM198Q66K66 360 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ACSM2BQ68CK6 577 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 RTL6Q6ICC9 239 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 FAM180BQ6P0A1 224 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ZNF295-AS1Q8N0V1 137 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 CCNYL1Q8N7R7 359 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ADCY4Q8NFM4 1077 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ZNF597Q96LX8 424 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ITPAQ9BY32 194 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 ANGPTL4Q9BY76 406 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 MID1IP1Q9NPA3 183 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 SPRR3Q9UBC9 169 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 FAM215AQ9Y5M1 114 aa19.91■□□□□ 0.78
CCDC28B-201ENST00000373602 GNG14A0A1W2PPG7 69 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 UBFD1O14562 309 aaKnown RBP19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 WDR1O75083 606 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 SNX4O95219 450 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 NAGAP17050 411 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 TIA1P31483 386 aaKnown RBP eCLIP19.9■□□□□ 0.784e-12■■□□□ 12.6
CCDC28B-201ENST00000373602 SLCO1A2P46721 670 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 CCT5P48643 541 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 FOXA1P55317 472 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 RPP38P78345 283 aaKnown RBP19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 LTB4RQ15722 352 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 CCDC153Q494R4 210 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 TRMT12Q53H54 448 aaKnown RBP19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 WLSQ5T9L3 541 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 BICRALQ6AI39 1079 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 GALNT18Q6P9A2 607 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 CCDC71Q8IV32 467 aaPredicted RBP19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 PRR22Q8IZ63 422 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 SIMC1Q8NDZ2 872 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 NEIL3Q8TAT5 605 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 ZNF675Q8TD23 568 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 C16orf78Q8WTQ4 265 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 NTNG2Q96CW9 530 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 HSPBAP1Q96EW2 488 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 RILPQ96NA2 401 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 TTYH2Q9BSA4 534 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 SIRT5Q9NXA8 310 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 NCKAP5O14513 1909 aa19.9■□□□□ 0.78
CCDC28B-201ENST00000373602 PLIN3O60664 434 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 PPM1BO75688 479 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 ABCB1P08183 1280 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 PCSK2P16519 638 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 KRT15P19012 456 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 CRHR1P34998 444 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 CASP3P42574 277 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 DNAJB13P59910 316 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 ZNF628Q5EBL2 1059 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 FNDC7Q5VTL7 733 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 SCIMPQ6UWF3 145 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 B3GNT6Q6ZMB0 384 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 SAMD14Q8IZD0 417 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 OR52R1Q8NGF1 315 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 LCORQ96JN0 433 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 TREX2Q9BQ50 279 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 SLC6A15Q9H2J7 730 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 PRODH2Q9UF12 536 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms