RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SDC3O75056 442 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 CCNB2O95067 398 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 CH25HO95992 272 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 ST13P50502 369 aaKnown RBP13.12□□□□□ -0.31
TRIM4-201ENST00000349062 HYAL2Q12891 473 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 ILF3Q12906 894 aaKnown RBP eCLIP13.12□□□□□ -0.31
TRIM4-201ENST00000349062 NNATQ16517 81 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 ENTHD1Q8IYW4 607 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 SERHL2Q9H4I8 314 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 NMNAT1Q9HAN9 279 aaPredicted RBP13.12□□□□□ -0.31
TRIM4-201ENST00000349062 PELI2Q9HAT8 420 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 HRASLS2Q9NWW9 162 aa13.12□□□□□ -0.31
TRIM4-201ENST00000349062 CPSF4LA6NMK7 179 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ARAFP10398 606 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CPN2P22792 545 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ATP5A1P25705 553 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PPP2R1BP30154 601 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PKLRP30613 574 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 LTBRP36941 435 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 MAP4K2Q12851 820 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 MAD2L1BPQ15013 274 aaPredicted RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CTF1Q16619 201 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 FRMPD2BQ6IN97 320 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PTCHD4Q6ZW05 846 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 C16orf62Q7Z3J2 963 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PJA1Q8NG27 643 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 OR4D11Q8NGI4 311 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ITPKCQ96DU7 683 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 WDR34Q96EX3 536 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 TOE1Q96GM8 510 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 AMDHD1Q96NU7 426 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CCDC3Q9BQI4 270 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CHST8Q9H2A9 424 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 EXOSC4Q9NPD3 245 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 USE1Q9NZ43 259 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 KRT8P05787 483 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 SRP54P61011 504 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 RPS3AP61247 264 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PDE7AQ13946 482 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ARHGAP19Q14CB8 494 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 MED22Q15528 200 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 KIAA1161Q6NSJ0 714 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 TBC1D19Q8N5T2 526 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 S100ZQ8WXG8 99 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CDCA3Q99618 268 aaPredicted RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PIP5K1AQ99755 562 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 TP63Q9H3D4 680 aaPredicted RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 SLC17A4Q9Y2C5 497 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 MRPS2Q9Y399 296 aaKnown RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ZNF780BQ9Y6R6 833 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CYP7B1O75881 506 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CKMT1AP12532 417 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CD36P16671 472 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 VSX2P58304 361 aaPredicted RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ZNF33BQ06732 778 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 FADDQ13158 208 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 HTR4Q13639 388 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 GPR68Q15743 365 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 ABHD17CQ6PCB6 329 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 COMTD1Q86VU5 262 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 CREB3L4Q8TEY5 395 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 FKBP10Q96AY3 582 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 SIRT3Q9NTG7 399 aaPredicted RBP13.11□□□□□ -0.31
TRIM4-201ENST00000349062 GIMAP4Q9NUV9 329 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 MAPRE3Q9UPY8 281 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 PCDHGA6Q9Y5G7 932 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 NOX1Q9Y5S8 564 aa13.11□□□□□ -0.31
TRIM4-201ENST00000349062 TAF4O00268 1085 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 CTSVO60911 334 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 SEMA4FO95754 770 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 CTSBP07858 339 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 S100A1P23297 94 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 CNR2P34972 360 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 UBXN2BQ14CS0 331 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 ALG11Q2TAA5 492 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 VRK2Q86Y07 508 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 FAM83FQ8NEG4 500 aaPredicted RBP13.1□□□□□ -0.31
TRIM4-201ENST00000349062 GPR32P1Q8NGA4 272 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 OR2L8Q8NGY9 312 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 LGALS12Q96DT0 336 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 S1PR5Q9H228 398 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 RNF167Q9H6Y7 350 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 MVB12BQ9H7P6 319 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 ACER3Q9NUN7 267 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 MS4A12Q9NXJ0 267 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 TVP23BQ9NYZ1 205 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 ITGB1BP2Q9UKP3 347 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 BOLA1Q9Y3E2 137 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 PRAMEF27A3QJZ7 478 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 SMIM30A4D0T7 59 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 P2RX6O15547 441 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 ALOX5P09917 674 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 GABRG2P18507 467 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 HNRNPA2B1P22626 353 aaKnown RBP13.1□□□□□ -0.31
TRIM4-201ENST00000349062 VASPP50552 380 aaPredicted RBP13.1□□□□□ -0.31
TRIM4-201ENST00000349062 ERV3-1Q14264 604 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 SEC23BQ15437 767 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 SNAP47Q5SQN1 464 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 DCST1Q5T197 706 aa13.1□□□□□ -0.31
TRIM4-201ENST00000349062 RRM2BQ7LG56 351 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms