RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SLC35A5Q9BS91 424 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 DUSP23Q9BVJ7 150 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 ACOT13Q9NPJ3 140 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 C1GALT1Q9NS00 363 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 LYARQ9NX58 379 aaKnown RBP15.84■□□□□ 0.13
CPSF4-201ENST00000292476 NDUFAF4Q9P032 175 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 POFUT2Q9Y2G5 429 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 KLHL20Q9Y2M5 609 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 LYVE1Q9Y5Y7 322 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 HEATR5BQ9P2D3 2071 aa15.84■□□□□ 0.13
CPSF4-201ENST00000292476 ARRDC5A6NEK1 342 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 CLDN24A6NM45 220 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 CLDN25C9JDP6 229 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 TNFRSF11BO00300 401 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 DIRAS1O95057 198 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ZNF806P0C7X5 589 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ALPPL2P10696 532 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 TYRP1P17643 537 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 CDH3P22223 829 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 RRM2P31350 389 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 GGT2P36268 569 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 HBA1P69905 142 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 IL1RL1Q01638 556 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 EEF1A2Q05639 463 aaKnown RBP15.83■□□□□ 0.13
CPSF4-201ENST00000292476 SCARB2Q14108 478 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 LAPTM4AQ15012 233 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 DGUOKQ16854 277 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ANKDD1AQ495B1 522 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 DCDC5Q6ZRR9 648 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 RNF44Q7L0R7 432 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 TRIM73Q86UV7 250 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 CARFQ8N187 725 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 OR4C15Q8NGM1 316 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 GEMIN6Q8WXD5 167 aaKnown RBP15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ABTB1Q969K4 478 aaPredicted RBP15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ZDHHC12Q96GR4 267 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ZNF300Q96RE9 604 aaPredicted RBP15.83■□□□□ 0.13
CPSF4-201ENST00000292476 CD180Q99467 661 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 PRDM7Q9NQW5 492 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 TAS2R9Q9NYW1 312 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 TAS2R7Q9NYW3 318 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 ERGIC3Q9Y282 383 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 SNX11Q9Y5W9 270 aa15.83■□□□□ 0.13
CPSF4-201ENST00000292476 PI4KAP42356 2102 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 RTCAO00442 366 aaKnown RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 FOXD2O60548 495 aaPredicted RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 WBP4O75554 376 aaKnown RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 SULT1C4O75897 302 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 KLHL18O94889 574 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 ARAFP10398 606 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 ATP5A1P25705 553 aaKnown RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 CRATP43155 626 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 GPR3P46089 330 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 MASP1P48740 699 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 KCNC4Q03721 635 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 NR1D2Q14995 579 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 PEAR1Q5VY43 1037 aaPredicted RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 VN1R4Q7Z5H5 301 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 TSEN54Q7Z6J9 526 aaKnown RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 CCDC71Q8IV32 467 aaPredicted RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 SFTPA2Q8IWL1 248 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 ENTHD1Q8IYW4 607 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 ACOT4Q8N9L9 421 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 OR6C4Q8NGE1 309 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 PHF10Q8WUB8 498 aaKnown RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 TCTN2Q96GX1 697 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 SH3YL1Q96HL8 342 aaPredicted RBP15.83■□□□□ 0.12
CPSF4-201ENST00000292476 LHX9Q9NQ69 397 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 FBXO8Q9NRD0 319 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 RXFP3Q9NSD7 469 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 GPATCH2Q9NW75 528 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 EPHA6Q9UF33 1036 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 ANGPT4Q9Y264 503 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 PCDHGA6Q9Y5G7 932 aa15.83■□□□□ 0.12
CPSF4-201ENST00000292476 LAMA1P25391 3075 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 A0A1W2PRB8 838 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 GDF9O60383 454 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 SDC3O75056 442 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 C6orf47O95873 294 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 SLAMF1Q13291 335 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 TBCEQ15813 527 aaPredicted RBP15.82■□□□□ 0.12
CPSF4-201ENST00000292476 RGS21Q2M5E4 152 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 TRIM61Q5EBN2 209 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 NIPAL1Q6NVV3 410 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 ARMC8Q8IUR7 673 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 P3H2Q8IVL5 708 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 DEPDC4Q8N2C3 294 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 MINDY2Q8NBR6 621 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 SPPL2AQ8TCT8 520 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 MYDGFQ969H8 173 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 AHCYL2Q96HN2 611 aaKnown RBP15.82■□□□□ 0.12
CPSF4-201ENST00000292476 TEFMQ96QE5 360 aaKnown RBP15.82■□□□□ 0.12
CPSF4-201ENST00000292476 CCDC3Q9BQI4 270 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 SORBS1Q9BX66 1292 aaKnown RBP15.82■□□□□ 0.12
CPSF4-201ENST00000292476 KLHL31Q9H511 634 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 AKIP1Q9NQ31 210 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 FSCN3Q9NQT6 498 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 PRDM9Q9NQV7 894 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 FKBP14Q9NWM8 211 aa15.82■□□□□ 0.12
CPSF4-201ENST00000292476 UCKL1Q9NWZ5 548 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms