RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RAB36O95755 333 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CERS1P27544 350 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 ARF3P61204 181 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 CCDC80Q76M96 950 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 GPALPP1Q8IXQ4 340 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 RNF113BQ8IZP6 322 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 MEIOBQ8N635 442 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 KRTCAP2Q8N6L1 136 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CLEC1AQ8NC01 280 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 TUBA1CQ9BQE3 449 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 NAALAD2Q9Y3Q0 740 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR52A4PA6NMU1 304 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 ZNF99A8MXY4 864 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 SLC22A1O15245 554 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 NR4A1P22736 598 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 RYKP34925 604 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CSNK2A1P68400 391 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 RELAQ04206 551 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 PGM2L1Q6PCE3 622 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 FIP1L1Q6UN15 594 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 CHTF18Q8WVB6 975 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 COPS4Q9BT78 406 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.92□□□□□ -0.34
LDLR-201ENST00000252444 TMEM168Q9H0V1 697 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 SPHK1Q9NYA1 384 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 TNFRSF10DQ9UBN6 386 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 C17orf105B2RV13 164 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 PDHA2P29803 388 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 PRDX3P30048 256 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 ACTA2P62736 377 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 ACTG2P63267 376 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 MED22Q15528 200 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 FAM182AQ5T1J6 154 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 KCTD18Q6PI47 426 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 EID2Q8N6I1 236 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 AQP11Q8NBQ7 271 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 OR1E3Q8WZA6 343 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 ABTB1Q969K4 478 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 GTPBP3Q969Y2 492 aaKnown RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 ELF4Q99607 663 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 GRIP2Q9C0E4 1043 aa12.92□□□□□ -0.34
LDLR-201ENST00000252444 BOKQ9UMX3 212 aaPredicted RBP12.92□□□□□ -0.34
LDLR-201ENST00000252444 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 OR7A17O14581 309 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 GALR3O60755 368 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 BMP2P12643 396 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 IFI30P13284 250 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 CAPZBP47756 277 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TUBA1BP68363 451 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 ZNF423Q2M1K9 1284 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 LPCAT4Q643R3 524 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TUBA1AQ71U36 451 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TMEFF1Q8IYR6 380 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 OR9I1Q8NGQ6 314 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 HDHD2Q9H0R4 259 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 PLEKHA1Q9HB21 404 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 A4GALTQ9NPC4 353 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TDRD15B5MCY1 1934 aaKnown RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 LOC100130705A0A1B0GUX0 176 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 LMO7DNF2Z398 122 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SEC14L5O43304 696 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 C8orf89P0DMQ9 161 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 NME1P15531 152 aaKnown RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 ARNTP27540 789 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 OMPP47874 163 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SLC9A3P48764 834 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 HTR6P50406 440 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SLC27A4Q6P1M0 643 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 HSDL2Q6YN16 418 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SPTY2D1-AS1A0A0U1RR47 76 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SLC22A31A6NKX4 558 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 LAMP1P11279 417 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 GSSP48637 474 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SELENOWP63302 87 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 PMS2P3Q13401 168 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 GPR18Q14330 331 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 BICRALQ6AI39 1079 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 ZNF367Q7RTV3 350 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TP53I13Q8NBR0 393 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 OLAHQ9NV23 265 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 ACOX3O15254 700 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TBX19O60806 448 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 SCRG1O75711 98 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 F8A1P23610 371 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 AK4P27144 223 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 RCVRNP35243 200 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 CSNK1G2P78368 415 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 EIF4EBP2Q13542 120 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 ASTLQ6HA08 431 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 ARL9Q6T311 187 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 PROKR2Q8NFJ6 384 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 OR8J1Q8NGP2 316 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TSEN15Q8WW01 171 aaKnown RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 HSPBAP1Q96EW2 488 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 TMEM19Q96HH6 336 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 C6orf106Q9H6K1 298 aaPredicted RBP12.91□□□□□ -0.34
LDLR-201ENST00000252444 TVP23BQ9NYZ1 205 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 PCDHGA5Q9Y5G8 931 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 U3KQV3 271 aa12.91□□□□□ -0.34
LDLR-201ENST00000252444 ZSWIM8A7E2V4 1837 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms