RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PRAMEF13Q5VWM6 474 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SAXO2Q658L1 398 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 TRIM40Q6P9F5 258 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 OXR1Q8N573 874 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 MORN4Q8NDC4 146 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 KBTBD8Q8NFY9 601 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 OR8K5Q8NH50 307 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 CREB3L4Q8TEY5 395 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 GDF15Q99988 308 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 HCAR1Q9BXC0 346 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SLC6A17Q9H1V8 727 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 WSB2Q9NYS7 404 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 SF3B6Q9Y3B4 125 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 ATG4BQ9Y4P1 393 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 A0A087WUU8 490 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 A0A087WV48 116 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SYNDIG1LA6NDD5 238 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 EIF3FO00303 357 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 DPM1O60762 260 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 POLR2EP19388 210 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 XPAP23025 273 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 PCBP4P57723 403 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 FCRLBQ6BAA4 426 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 FCGR1BQ92637 280 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 CNRIP1Q96F85 164 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 ZNF582Q96NG8 517 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 YME1L1Q96TA2 773 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 TBX5Q99593 518 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 TMED9Q9BVK6 235 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SEC14L3Q9UDX4 400 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 IRAK3Q9Y616 596 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 PRRC2CQ9Y520 2896 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 CDC42EP2O14613 210 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 HPGDSO60760 199 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 LIMS3P0CW19 117 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 LIMS4P0CW20 117 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 GPR1P46091 355 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 HNRNPFP52597 415 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 UBE3AQ05086 875 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 PIP5KL1Q5T9C9 394 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 C12orf73Q69YU5 71 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 ZNF517Q6ZMY9 492 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 ZNF367Q7RTV3 350 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 ADCK2Q7Z695 626 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SFTPA2Q8IWL1 248 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 FBXL6Q8N531 539 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 SUN3Q8TAQ9 357 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 UBASH3BQ8TF42 649 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 FAM46AQ96IP4 442 aaKnown RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 CAPNS2Q96L46 248 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 TMEM246Q9BRR3 403 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 CCDC177Q9NQR7 707 aaPredicted RBP10.08□□□□□ -0.8
USP28-201ENST00000003302 FBXL4Q9UKA2 621 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 CSNK1G3Q9Y6M4 447 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 RTTNQ86VV8 2226 aa10.08□□□□□ -0.8
USP28-201ENST00000003302 CPSF4LA6NMK7 179 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 MEN1O00255 615 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 HOXA2O43364 376 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 MYOGP15173 224 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 GPR4P46093 362 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 KCNJ5P48544 419 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 DCST1Q5T197 706 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 SLX4IPQ5VYV7 408 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 FAM131AQ6UXB0 335 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 DPPA4Q7L190 304 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TRIM43Q96BQ3 446 aaPredicted RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 NEURL3Q96EH8 262 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 RNF208Q9H0X6 261 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TESQ9UGI8 421 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 ISPDA4D126 451 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CD8B2A6NJW9 211 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 B4DXG7 233 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 ZNF670-ZNF695F2Z2N8 137 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 SLITRK5O94991 958 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CD8BP10966 210 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 BUD31P41223 144 aaPredicted RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 AVPR1BP47901 424 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 GIPRP48546 466 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 GPLD1P80108 840 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TMEM107Q6UX40 140 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 TMPRSS11AQ6ZMR5 421 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 LINC00299Q6ZSB3 139 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 KAT2AQ92830 837 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 C1GALT1C1Q96EU7 318 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 ZBED6CLQ96FA7 236 aaPredicted RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 CEP19Q96LK0 163 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 GFM1Q96RP9 751 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 NDEL1Q9GZM8 345 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CDCP1Q9H5V8 836 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CLN6Q9NWW5 311 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 NDUFB11Q9NX14 153 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 HEATR5AQ86XA9 2040 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 LOC102723532A0A0G2JNH3 316 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 OR1F1O43749 312 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 SH3BP5O60239 455 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 HMGN2P05204 90 aaKnown RBP10.07□□□□□ -0.8
USP28-201ENST00000003302 CISD3P0C7P0 127 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 DDCP20711 480 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 ETV6P41212 452 aa10.07□□□□□ -0.8
USP28-201ENST00000003302 CCT3P49368 545 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms