RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC22A20A6NK97 555 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 AKR1B15C9JRZ8 316 aaPredicted RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 RTCAO00442 366 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 FTCDO95954 541 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 PGRP06401 933 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ALOX15P16050 662 aaPredicted RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 CPN2P22792 545 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ATP5A1P25705 553 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 PLIN5Q00G26 463 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 FAPQ12884 760 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 DESI1Q6ICB0 168 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 CAVIN1Q6NZI2 390 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 IFNEQ86WN2 208 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 CNGA4Q8IV77 575 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ACOT4Q8N9L9 421 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 BBOF1Q8ND07 529 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 REPS1Q96D71 796 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 CALR3Q96L12 384 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 HS6ST2Q96MM7 605 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 RHNO1Q9BSD3 238 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ADAM19Q9H013 955 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 ESRP2Q9H6T0 727 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 METTL7AQ9H8H3 244 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 SNX15Q9NRS6 342 aa13.11□□□□□ -0.31
CLN3-249ENST00000636685 C20orf96Q9NUD7 363 aaPredicted RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 RYDENQ9NUL5 291 aaKnown RBP13.11□□□□□ -0.31
CLN3-249ENST00000636685 FAM234BA2RU67 622 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 OR6C76A6NM76 312 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 SSX4O60224 188 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 CD8BP10966 210 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 ZNF708P17019 499 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 ZNF16P17020 682 aaPredicted RBP13.1□□□□□ -0.31
CLN3-249ENST00000636685 TPSB2P20231 275 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 IL2P60568 153 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 RPP38P78345 283 aaKnown RBP13.1□□□□□ -0.31
CLN3-249ENST00000636685 VLDLRP98155 873 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 TGM3Q08188 693 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 TPSAB1Q15661 275 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 C18orf21Q32NC0 220 aaPredicted RBP13.1□□□□□ -0.31
CLN3-249ENST00000636685 LIPNQ5VXI9 398 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 C12orf54Q6X4T0 127 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 KRT78Q8N1N4 520 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 SMAP2Q8WU79 429 aaPredicted RBP13.1□□□□□ -0.31
CLN3-249ENST00000636685 FIG4Q92562 907 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 NEUROG1Q92886 237 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 PHACTR1Q9C0D0 580 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 LACRTQ9GZZ8 138 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 NT5DC2Q9H857 520 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 ACTR8Q9H981 624 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 GALNT9Q9HCQ5 603 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 SPACA6W5XKT8 324 aa13.1□□□□□ -0.31
CLN3-249ENST00000636685 PKD1L1Q8TDX9 2849 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 MIF4GDA9UHW6 222 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 UBFD1O14562 309 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 EMC8O43402 210 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 CBFA2T2O43439 604 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 LMX1BO60663 402 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 PRKRAO75569 313 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 ENO2P09104 434 aaPredicted RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 PPP3CBP16298 524 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 EGR1P18146 543 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 GNAZP19086 355 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 TCEA1P23193 301 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 IGFBP5P24593 272 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 DPP4P27487 766 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 GSTM2P28161 218 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 SSTR4P31391 388 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 HPDP32754 393 aaPredicted RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 PTGDSP41222 190 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 GDF5P43026 501 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 KCNC1P48547 511 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 TMED10P49755 219 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 SPRED3Q2MJR0 410 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 HSP90AA5PQ58FG0 334 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 CYB5R2Q6BCY4 276 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 ALKBH2Q6NS38 261 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 ADAM5Q6NVV9 412 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 MEX3DQ86XN8 651 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 C7orf57Q8NEG2 295 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 FBXW5Q969U6 566 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 TP53INP1Q96A56 240 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 SFXN2Q96NB2 322 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 KCNC2Q96PR1 638 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 RPF2Q9H7B2 306 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 IARS2Q9NSE4 1012 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 TAS2R10Q9NYW0 307 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 ZNF490Q9ULM2 529 aaPredicted RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 PROCRQ9UNN8 238 aa13.09□□□□□ -0.31
CLN3-249ENST00000636685 EXO1Q9UQ84 846 aaKnown RBP13.09□□□□□ -0.31
CLN3-249ENST00000636685 WASHC1A8K0Z3 465 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 CLOCKO15516 846 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 OR10H2O60403 315 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 ICOSLGO75144 302 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 SH3BGRLO75368 114 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 CBR3O75828 277 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 WDR47O94967 919 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 ABCB1P08183 1280 aaPredicted RBP13.08□□□□□ -0.32
CLN3-249ENST00000636685 GABRB3P28472 473 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 RPS13P62277 151 aaKnown RBP13.08□□□□□ -0.32
CLN3-249ENST00000636685 CDK16Q00536 496 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms