RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 LRRC46Q96FV0 321 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 TSPYL1Q9H0U9 437 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 NOL11Q9H8H0 719 aaKnown RBP16.92■□□□□ 0.3
CLN3-241ENST00000635861 ZDHHC18Q9NUE0 388 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 L3MBTL1Q9Y468 752 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 NPFFR2Q9Y5X5 522 aa16.92■□□□□ 0.3
CLN3-241ENST00000635861 AKAP6Q13023 2319 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 ZFHX3Q15911 3703 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 MPDZO75970 2070 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 GUCY1B2O75343 617 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 SIX3O95343 332 aaPredicted RBP16.91■□□□□ 0.3
CLN3-241ENST00000635861 COL6A2P12110 1019 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 CCNG1P51959 295 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 UAP1Q16222 522 aaPredicted RBP16.91■□□□□ 0.3
CLN3-241ENST00000635861 TSNAXIP1Q2TAA8 658 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 FRG2Q64ET8 278 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 C8orf74Q6P047 294 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 TAOK1Q7L7X3 1001 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 PM20D2Q8IYS1 436 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 PTGR2Q8N8N7 351 aaPredicted RBP16.91■□□□□ 0.3
CLN3-241ENST00000635861 OR4K14Q8NGD5 310 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 TRPC4APQ8TEL6 797 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 FRG2BQ96QU4 278 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 ALKBH4Q9NXW9 302 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 CFL2Q9Y281 166 aa16.91■□□□□ 0.3
CLN3-241ENST00000635861 NF1P21359 2839 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 LRRC14BA6NHZ5 514 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 GLOD5A6NK44 160 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 OR7A17O14581 309 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 HPNP05981 417 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 GDF1P27539 372 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 ARL1P40616 181 aaPredicted RBP16.9■□□□□ 0.3
CLN3-241ENST00000635861 MAGEA12P43365 314 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 SERPINB9P50453 376 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 NEK2P51955 445 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 IFT88Q13099 833 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 ARSKQ6UWY0 536 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 LIX1LQ8IVB5 337 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 ZNF615Q8N8J6 731 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 SPPL2AQ8TCT8 520 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 NINJ1Q92982 152 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 JSRP1Q96MG2 331 aaPredicted RBP16.9■□□□□ 0.3
CLN3-241ENST00000635861 ANGPTL4Q9BY76 406 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 OR10A5Q9H207 317 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 VPS11Q9H270 941 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 SLC6A15Q9H2J7 730 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 MTRF1LQ9UGC7 380 aaKnown RBP16.9■□□□□ 0.3
CLN3-241ENST00000635861 FOXD3Q9UJU5 478 aaPredicted RBP16.9■□□□□ 0.3
CLN3-241ENST00000635861 PCTPQ9UKL6 214 aa16.9■□□□□ 0.3
CLN3-241ENST00000635861 DVL2O14641 736 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 SMIM24O75264 130 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 EPPINO95925 133 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 NAGAP17050 411 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 CNTFP26441 200 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 SSTR4P31391 388 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 TIMP3P35625 211 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 DUSP8Q13202 625 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 NHSL2Q5HYW2 709 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 TTC19Q6DKK2 380 aaPredicted RBP16.89■□□□□ 0.29
CLN3-241ENST00000635861 TMEM81Q6P7N7 255 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 WDR53Q7Z5U6 358 aaPredicted RBP16.89■□□□□ 0.29
CLN3-241ENST00000635861 PACS2Q86VP3 889 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 LACC1Q8IV20 430 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 ADIPOR1Q96A54 375 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 MRRFQ96E11 262 aaKnown RBP16.89■□□□□ 0.29
CLN3-241ENST00000635861 PRDM14Q9GZV8 571 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 UBQLN3Q9H347 655 aa16.89■□□□□ 0.29
CLN3-241ENST00000635861 TEX10Q9NXF1 929 aaPredicted RBP16.89■□□□□ 0.29
CLN3-241ENST00000635861 ZNF629Q9UEG4 869 aaPredicted RBP16.89■□□□□ 0.29
CLN3-241ENST00000635861 ESYT3A0FGR9 886 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 C1orf226A1L170 272 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 GOLGA6L10A6NI86 522 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 WASHC1A8K0Z3 465 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 SYT5O00445 386 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 PGRMC2O15173 223 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 INHBAP08476 426 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 CPMP14384 443 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 H2AFXP16104 143 aaPredicted RBP16.88■□□□□ 0.29
CLN3-241ENST00000635861 PORP16435 677 aaPredicted RBP16.88■□□□□ 0.29
CLN3-241ENST00000635861 CEACAM8P31997 349 aaPredicted RBP16.88■□□□□ 0.29
CLN3-241ENST00000635861 XKP51811 444 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 DLX5P56178 289 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 CRYZQ08257 329 aaKnown RBP16.88■□□□□ 0.29
CLN3-241ENST00000635861 TRAF3Q13114 568 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 FBXL19-AS1Q494R0 122 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 METTL4Q8N3J2 472 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 OR52B6Q8NGF0 335 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 SLC44A1Q8WWI5 657 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 HSPBAP1Q96EW2 488 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 TMEM41AQ96HV5 264 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 RILPQ96NA2 401 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 CDK15Q96Q40 435 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 BRF2Q9HAW0 419 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 NINJ2Q9NZG7 142 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 EDARQ9UNE0 448 aa16.88■□□□□ 0.29
CLN3-241ENST00000635861 V9GYY5 206 aaPredicted RBP16.88■□□□□ 0.29
CLN3-241ENST00000635861 C15orf38-AP3S2A0A0A6YYH1 394 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 KRT38O76015 456 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 GBAP04062 536 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 KRT15P19012 456 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms