RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FNDC11Q9BVV2 318 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 LGR4Q9BXB1 951 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 POLR2J2Q9GZM3 115 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 EXOSC4Q9NPD3 245 aaKnown RBP12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TVP23BQ9NYZ1 205 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 ACSL5Q9ULC5 683 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 TBC1D24Q9ULP9 559 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 SLC9A8Q9Y2E8 581 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 V9GYH0 126 aa12.06□□□□□ -0.48
LINC00540-203ENST00000631321 IGKV1-8A0A0C4DH67 115 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 IQCMA0A1B0GVH7 501 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 LRIT2A6NDA9 550 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 MAN2B1O00754 1011 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 PCCBP05166 539 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ACADMP11310 421 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 MAGP20916 626 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GIPRP48546 466 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 C1DQ13901 141 aaKnown RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ZIC1Q15915 447 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 WSCD2Q2TBF2 565 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 NDUFAF5Q5TEU4 345 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 PRAMEF8Q5VWM4 474 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 PRAMEF7Q5VXH5 474 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF793Q6ZN11 406 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 BCDIN3DQ7Z5W3 292 aaKnown RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 MRGPREQ86SM8 312 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 IQCF1Q8N6M8 205 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 OR4K5Q8NGD3 323 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 OR52I1Q8NGK6 324 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 OR5D16Q8NGK9 328 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ASB15Q8WXK1 588 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 TMCO6Q96DC7 493 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 PRRC1Q96M27 445 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 FAIM2Q9BWQ8 316 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 HOXD1Q9GZZ0 328 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GPR89AB7ZAQ6 455 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 TLX2O43763 284 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 COQ9O75208 318 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 RAB36O95755 333 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 CHRM4P08173 479 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 SLC35G4P0C7Q5 338 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GPR89BP0CG08 455 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 HOXD12P35452 270 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 MAN2A2P49641 1150 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GAS1P54826 345 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 COPZ1P61923 177 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 UBE3AQ05086 875 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 PRDX1Q06830 199 aaKnown RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 DMPKQ09013 629 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 FUT5Q11128 374 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GINS1Q14691 196 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 C3orf38Q5JPI3 329 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 FAM181AQ8N9Y4 354 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 OR9Q1Q8NGQ5 310 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF582Q96NG8 517 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 GPA33Q99795 319 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 TEX101Q9BY14 249 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ZCCHC3Q9NUD5 404 aaKnown RBP12.05□□□□□ -0.48
LINC00540-203ENST00000631321 ERVK13-1Q9NX77 482 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 SSR3Q9UNL2 185 aa12.05□□□□□ -0.48
LINC00540-203ENST00000631321 IGLON5A6NGN9 336 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 MYL12BO14950 172 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 CASC3O15234 703 aaKnown RBP12.04□□□□□ -0.48
LINC00540-203ENST00000631321 FGBP02675 491 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 CPEP16870 476 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 GSTM3P21266 225 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 NTSP30990 170 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 SSR2P43308 183 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 ANXA11P50995 505 aaKnown RBP12.04□□□□□ -0.48
LINC00540-203ENST00000631321 CLCNKAP51800 687 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 TAS2R38P59533 333 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PSPHP78330 225 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 BNC1Q01954 994 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 CAMK1Q14012 370 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 GNA13Q14344 377 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 AGAP6Q5VW22 663 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 ACSM5Q6NUN0 579 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PAQR6Q6TCH4 344 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 RAB42Q8N4Z0 105 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 CELF2-AS1Q8N7Q2 184 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 OR6T1Q8NGN1 323 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 SUN3Q8TAQ9 357 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 ZFYVE19Q96K21 471 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 AGAP4Q96P64 663 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 KCNK12Q9HB15 430 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 MOV10Q9HCE1 1003 aaKnown RBP12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PRSS16Q9NQE7 514 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 C14orf119Q9NWQ9 140 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 POU2F3Q9UKI9 436 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 KLHL20Q9Y2M5 609 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PCDHGB2Q9Y5G2 931 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 DENND4AQ7Z401 1863 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PLXND1Q9Y4D7 1925 aa12.04□□□□□ -0.48
LINC00540-203ENST00000631321 PPM1DO15297 605 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 IL1AP01583 271 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 EPHX1P07099 455 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 TEAD1P28347 426 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 GPC1P35052 558 aa12.03□□□□□ -0.48
LINC00540-203ENST00000631321 NCBP2P52298 156 aaKnown RBP eCLIP12.03□□□□□ -0.48
LINC00540-203ENST00000631321 LARS2Q15031 903 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms