RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PSG11Q9UQ72 335 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 PDE10AQ9Y233 779 aa1.54□□□□□ -2.16
SCN1A-208ENST00000625916 HMGB1P1B2RPK0 211 aaPredicted RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 KBTBD13C9JR72 458 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 ANKRD63C9JTQ0 380 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 G3V3Y1 287 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 PFASO15067 1338 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 SELENOFO60613 162 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 SLC2A10O95528 541 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 IGKV1-17P01599 117 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 RLN1P04808 185 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF823P16415 610 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 GJB2P29033 226 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 HTR1FP30939 366 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 TIA1P31483 386 aaKnown RBP eCLIP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 RBMXP38159 391 aaKnown RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 FKBP1BP68106 108 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 PSMD6Q15008 389 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 DCAF12Q5T6F0 453 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 PM20D1Q6GTS8 502 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 SLFN11Q7Z7L1 901 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC89Q8N998 374 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 KIAA0895Q8NCT3 520 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 TRAF3IP1Q8TDR0 691 aaPredicted RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 UBLCP1Q8WVY7 318 aaPredicted RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 CKAP2Q8WWK9 683 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 PNPLA2Q96AD5 504 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 SLC25A38Q96DW6 304 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 INTS14Q96SY0 518 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 C17orf62Q9BQA9 187 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 ATG101Q9BSB4 218 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 RSPO3Q9BXY4 272 aaPredicted RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 ELOVL4Q9GZR5 314 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 GLT8D2Q9H1C3 349 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 VCXQ9H320 206 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 NECAP2Q9NVZ3 263 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 PLEK2Q9NYT0 353 aa1.53□□□□□ -2.16
SCN1A-208ENST00000625916 NFKBIL1Q9UBC1 381 aaPredicted RBP1.53□□□□□ -2.16
SCN1A-208ENST00000625916 COL1A2P08123 1366 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 A0A1B0GUA9 196 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 CTDSPLO15194 276 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 WDR46O15213 610 aaKnown RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 DKC1O60832 514 aaKnown RBP eCLIP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 RAD51DO75771 328 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 LETM1O95202 739 aaPredicted RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 HPNP05981 417 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 ZFYP08048 801 aaPredicted RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 GSTA2P09210 222 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 EZRP15311 586 aaKnown RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 GLRA1P23415 457 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 PTPN4P29074 926 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 MTIF2P46199 727 aaKnown RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 IER3P46695 156 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 SLC3A1Q07837 685 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 MS4A13Q5J8X5 152 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 CYB5R2Q6BCY4 276 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 METTL23Q86XA0 190 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 KLHL7Q8IXQ5 586 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 ARIH2OSQ8N7S6 290 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 FBXO25Q8TCJ0 367 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 DNASE1L2Q92874 299 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 BAG1Q99933 345 aaPredicted RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 AP1M1Q9BXS5 423 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 Q9HAA7 133 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 GPR173Q9NS66 373 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 FAM212BQ9NTI7 297 aaPredicted RBP1.52□□□□□ -2.17
SCN1A-208ENST00000625916 ZNF221Q9UK13 617 aa1.52□□□□□ -2.17
SCN1A-208ENST00000625916 LRRK1Q38SD2 2015 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 ACEP12821 1306 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 ARHGAP21Q5T5U3 1957 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 TRAV34A0A0B4J273 112 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 YDJCA8MPS7 323 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 SIX3O95343 332 aaPredicted RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 CT45A10P0DMU9 189 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 CCND3P30281 292 aaPredicted RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 GP5P40197 560 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 AKAP17AQ02040 695 aaKnown RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 TFCP2Q12800 502 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 ZNF528Q3MIS6 628 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 GLYR1Q49A26 553 aaPredicted RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 SNRNP48Q6IEG0 339 aaKnown RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 CAVIN1Q6NZI2 390 aaKnown RBP1.51□□□□□ -2.17
SCN1A-208ENST00000625916 TRAT1Q6PIZ9 186 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 PET117Q6UWS5 81 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 MARCH1Q8TCQ1 289 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 SAP25Q8TEE9 199 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 ERO1AQ96HE7 468 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 C9orf85Q96MD7 179 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 PLEKHF1Q96S99 279 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 LRRC2Q9BYS8 371 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 TRIM9Q9C026 710 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 SLCO1C1Q9NYB5 712 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 SWAP70Q9UH65 585 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 GPR132Q9UNW8 380 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 OR1A2Q9Y585 309 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 WSB1Q9Y6I7 421 aa1.51□□□□□ -2.17
SCN1A-208ENST00000625916 DHX57Q6P158 1386 aaKnown RBP1.5□□□□□ -2.17
SCN1A-208ENST00000625916 IGLV4-60A0A075B6I1 120 aa1.5□□□□□ -2.17
SCN1A-208ENST00000625916 MAGEB16A2A368 324 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms