RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 UBXN7O94888 489 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 CDH3P22223 829 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 TLX1P31314 330 aaPredicted RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 ANXA11P50995 505 aaKnown RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 KEAP1Q14145 624 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 MICAQ29983 383 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 BORAQ6PGQ7 559 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 COMTD1Q86VU5 262 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 GKN2Q86XP6 184 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 OR9Q2Q8NGE9 314 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 OR4D11Q8NGI4 311 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 VANGL1Q8TAA9 524 aaPredicted RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 MIPOL1Q8TD10 442 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 OR7D2Q96RA2 312 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 DDX18Q9NVP1 670 aaKnown RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 AASSQ9UDR5 926 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 NAALAD2Q9Y3Q0 740 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 NINQ8N4C6 2090 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 FFAR1O14842 300 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 SERPINB7O75635 380 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 GADD45GO95257 159 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 CRISP3P54108 245 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 NPRL3Q12980 569 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 CDK5R2Q13319 367 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 C6orf132Q5T0Z8 1188 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 ZNF773Q6PK81 442 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 FAM111BQ6SJ93 734 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 KCTD8Q6ZWB6 473 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 WDR53Q7Z5U6 358 aaPredicted RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 IQCHQ86VS3 1027 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 RBM45Q8IUH3 476 aaKnown RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 GJD3Q8N144 294 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 OR7G2Q8NG99 324 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 ZNF354BQ96LW1 612 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 PCED1AQ9H1Q7 454 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 POLR1BQ9H9Y6 1135 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 LYRM4Q9HD34 91 aa16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 NDRG4Q9ULP0 352 aaKnown RBP16.3■□□□□ 0.2
PCDHGC3-205ENST00000617641 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SEMA7AO75326 666 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 BCKDHBP21953 392 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 MAGEA8P43361 318 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 LIMS1P48059 325 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 GPAT3Q53EU6 434 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 KRT73Q86Y46 540 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 LACC1Q8IV20 430 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 C19orf47Q8N9M1 422 aaKnown RBP16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 TMEM52Q8NDY8 209 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SETD9Q8NE22 299 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 BBS10Q8TAM1 723 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 FBLIM1Q8WUP2 373 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 GIMAP5Q96F15 307 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 NIPSNAP1Q9BPW8 284 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 MS4A12Q9NXJ0 267 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SLC9B1P1A6NJY1 282 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 GALR3O60755 368 aaPredicted RBP16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SDC3O75056 442 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 FASLGP48023 281 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 MAN2A2P49641 1150 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 RPP38P78345 283 aaKnown RBP16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SHC2P98077 582 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 DEFB133Q30KQ1 61 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 MANEAQ5SRI9 462 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 AVL9Q8NBF6 648 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 SIMC1Q8NDZ2 872 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 PHF10Q8WUB8 498 aaKnown RBP16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 NCSTNQ92542 709 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 ITFG2Q969R8 447 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 GUCD1Q96NT3 240 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 GABARAPL3Q9BY60 117 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 PRDM6Q9NQX0 595 aa16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 PAPOLBQ9NRJ5 636 aaKnown RBP16.29■□□□□ 0.2
PCDHGC3-205ENST00000617641 FAM227AF5H4B4 570 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 SGK494L7N484 410 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 SLC1A7O00341 560 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 LDB3O75112 727 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 HMGA2P52926 109 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 ESRRGP62508 458 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 ZP2Q05996 745 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 PMS2P3Q13401 168 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 NEDD8Q15843 81 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 TCTN3Q6NUS6 607 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 DEF8Q6ZN54 512 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 Q6ZPB1 254 aaPredicted RBP16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 GPR141Q7Z602 305 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 CCDC71Q8IV32 467 aaPredicted RBP16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 BPIFB6Q8NFQ5 453 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 DOK4Q8TEW6 326 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 RASSF5Q8WWW0 418 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 BCL2L10Q9HD36 194 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 KCND3Q9UK17 655 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 AQP9O43315 295 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 DCNP07585 359 aaKnown RBP16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 ANXA8P13928 327 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 CPMP14384 443 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 FMO3P31513 532 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 GSSP48637 474 aa16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 CSNK1EP49674 416 aaKnown RBP16.28■□□□□ 0.2
PCDHGC3-205ENST00000617641 PIGFQ07326 219 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms