RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 WDR1O75083 606 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SH3BGRLO75368 114 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 EEDO75530 441 aaKnown RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 OTCP00480 354 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 CELA3AP09093 270 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 MAN2A2P49641 1150 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 NEK2P51955 445 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 HNRNPH2P55795 449 aaKnown RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 ASPHQ12797 758 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SLC10A1Q14973 349 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ZNF791Q3KP31 576 aaPredicted RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 RTL6Q6ICC9 239 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 OR4N5Q8IXE1 308 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 C9orf40Q8IXQ3 194 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 C4orf33Q8N1A6 199 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 OR4F6Q8NGB9 312 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SLC22A8Q8TCC7 542 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ATP6V1E2Q96A05 226 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SARAFQ96BY9 339 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 FBXL20Q96IG2 436 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 APOPT1Q96IL0 206 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ZNF559Q9BR84 538 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 RPF2Q9H7B2 306 aaKnown RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 SLC24A3Q9HC58 644 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 SEMA4BQ9NPR2 832 aaPredicted RBP17.47■□□□□ 0.39
CDX1-202ENST00000616154 ZNF225Q9UK10 706 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ADAM29Q9UKF5 820 aa17.47■□□□□ 0.39
CDX1-202ENST00000616154 ANKHD1Q8IWZ3 2542 aaKnown RBP17.46■□□□□ 0.39
CDX1-202ENST00000616154 ATP6AP2A0A1C7CYW4 349 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 GOLGA8RI6L899 631 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 DYRK3O43781 588 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 HCN1O60741 890 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 ATP6AP2O75787 350 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 NADKO95544 446 aaPredicted RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 ZFP36L2P47974 494 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 SLC18A1P54219 525 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 MAGOHP61326 146 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 PLIN5Q00G26 463 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 TBL3Q12788 808 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 ZNF678Q5SXM1 525 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 SLC22A10Q63ZE4 541 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 LETMD1Q6P1Q0 360 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 LYPD8Q6UX82 237 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 NUDT13Q86X67 352 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 CLYBLQ8N0X4 340 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 SLC15A4Q8N697 577 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 GOLGA6L1Q8N7Z2 621 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 OR10Q1Q8NGQ4 319 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 PAQR8Q8TEZ7 354 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 SPACA9Q96E40 222 aaPredicted RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 RBM18Q96H35 190 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 ART5Q96L15 291 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 RYDENQ9NUL5 291 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.46■□□□□ 0.38
CDX1-202ENST00000616154 TRPS1Q9UHF7 1281 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 DCDC2Q9UHG0 476 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 ACAD8Q9UKU7 415 aa17.46■□□□□ 0.38
CDX1-202ENST00000616154 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.46■□□□□ 0.38
CDX1-202ENST00000616154 FREM3P0C091 2139 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 ITPR3Q14573 2671 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 A0A0G2JNJ9 132 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 HRKO00198 91 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 PPP6CO00743 305 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 DLX3O60479 287 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 GLRA3O75311 464 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 TAC1P20366 129 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 ATP5F1P24539 256 aaPredicted RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 TLX1P31314 330 aaPredicted RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 PIGAP37287 484 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 BUD31P41223 144 aaPredicted RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 FOLH1Q04609 750 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 C1orf185Q5T7R7 199 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 CES4AQ5XG92 561 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 C18orf63Q68DL7 685 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 DGAT2L6Q6ZPD8 337 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 MILR1Q7Z6M3 343 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 DND1Q8IYX4 353 aaKnown RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 PPWD1Q96BP3 646 aaKnown RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 TMEM237Q96Q45 408 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 ZNF382Q96SR6 550 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 LDAHQ9H6V9 325 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 ZNF703Q9H7S9 590 aaPredicted RBP17.45■□□□□ 0.38
CDX1-202ENST00000616154 BRF2Q9HAW0 419 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 FAM53CQ9NYF3 392 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 Q9UFV3 132 aa17.45■□□□□ 0.38
CDX1-202ENST00000616154 TRGV5A0A0B4J1U4 118 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 A0A1W2PR48 441 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 H3BQF6 201 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 FAM58BPP0C7Q3 252 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 ALOX15P16050 662 aaPredicted RBP17.44■□□□□ 0.38
CDX1-202ENST00000616154 ENDOUP21128 410 aaKnown RBP17.44■□□□□ 0.38
CDX1-202ENST00000616154 GALNSP34059 522 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 ADH7P40394 386 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 CCT5P48643 541 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 PRKAA2P54646 552 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 CDH13P55290 713 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 CLCQ05315 142 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 IFT88Q13099 833 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 SPRED3Q2MJR0 410 aa17.44■□□□□ 0.38
CDX1-202ENST00000616154 UNC50Q53HI1 259 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms