RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SLC22A31A6NKX4 558 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 DRGXA6NNA5 263 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 C2orf74A8MZ97 194 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 GPR37L1O60883 481 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 IL1RNP18510 177 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 VEZF1Q14119 521 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 AAK1Q2M2I8 961 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF300Q96RE9 604 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 CLCC1Q96S66 551 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 STUB1Q9UNE7 303 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 SH3D21A4FU49 640 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 M0R3H8 397 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 RNF13O43567 381 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 GJB3O75712 270 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 ADH7P40394 386 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 MAD2L1BPQ15013 274 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM35AQ53FP2 167 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 RUNDC3AQ59EK9 446 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PHC2Q8IXK0 858 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 PAPD5Q8NDF8 572 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 OR8S1Q8NH09 359 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 TRIM43Q96BQ3 446 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NMNAT1Q9HAN9 279 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NANSQ9NR45 359 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 NLKQ9UBE8 527 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 MLXQ9UH92 298 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 BTNL2Q9UIR0 455 aa13.35□□□□□ -0.27
CPSF1-212ENST00000616140 TPRP12270 2363 aaKnown RBP13.35□□□□□ -0.27
CPSF1-212ENST00000616140 UNC119BA6NIH7 251 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 SLC19A2O60779 497 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OSMP13725 252 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ARSAP15289 507 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 NKX2-5P52952 324 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 FXYD6P3P58550 94 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ALG1LQ6GMV1 187 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OR4C11Q6IEV9 310 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 DPY19L2P1Q6NXN4 242 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ARMCX6Q7L4S7 300 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 NRMQ8IXM6 262 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 SPAG16Q8N0X2 631 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OR2L8Q8NGY9 312 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 NEIL2Q969S2 332 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 CREB3L1Q96BA8 519 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 CXCL16Q9H2A7 254 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 HEBP1Q9NRV9 189 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 SCP2D1Q9UJQ7 156 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 MYH9P35579 1960 aaKnown RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 TRBV2A0A0J9YWF9 115 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 A0A1B0GVG6 124 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 FUOMA2VDF0 154 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GRXCR2A6NFK2 248 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 M0R129 80 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 M0R233 179 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OR2B3O76000 313 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 HCKP08631 526 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 SPARCP09486 303 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 CDK4P11802 303 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 PFKLP17858 780 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GJA5P36382 358 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GDI2P50395 445 aaKnown RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 E2F1Q01094 437 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 LRIT3Q3SXY7 679 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 CDKL4Q5MAI5 379 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 EIF5AL1Q6IS14 154 aaKnown RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 C12orf40Q86WS4 652 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 DEFB119Q8N690 84 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OR5AR1Q8NGP9 310 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 OR56A3Q8NH54 315 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 UBXN10Q96LJ8 280 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 FZD3Q9NPG1 666 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 FAIMQ9NVQ4 179 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 TMEM45AQ9NWC5 275 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 HPF1Q9NWY4 346 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 INTS6Q9UL03 887 aaKnown RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GXYLT2A0PJZ3 443 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF208O43345 1280 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GNSP15586 552 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ACTC1P68032 377 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 ACTA1P68133 377 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 RPA4Q13156 261 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 RPS26P11Q5JNZ5 115 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 KIAA0319Q5VV43 1072 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 TCEAL6Q6IPX3 200 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 NAXEQ8NCW5 288 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 AKAP1Q92667 903 aaKnown RBP eCLIP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 GTF2H4Q92759 462 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 FAM46AQ96IP4 442 aaKnown RBP13.34□□□□□ -0.27
CPSF1-212ENST00000616140 PRODH2Q9UF12 536 aa13.34□□□□□ -0.27
CPSF1-212ENST00000616140 C7orf72A4D263 438 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 PCDH17O14917 1159 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 RBBP9O75884 186 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 ARHGEF15O94989 841 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 PORP16435 677 aaPredicted RBP13.33□□□□□ -0.27
CPSF1-212ENST00000616140 CCR7P32248 378 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 ARRB1P49407 418 aaPredicted RBP13.33□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF542PQ5EBM4 170 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 UNC5DQ6UXZ4 953 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 TMPRSS12Q86WS5 348 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 PLCZ1Q86YW0 608 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 TCEAL8Q8IYN2 117 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms