RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TGM3Q08188 693 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 GRIN2CQ14957 1233 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 SSX1Q16384 188 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 C10orf53Q8N6V4 93 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CXorf40AQ8TE69 158 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 OR5P2Q8WZ92 322 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 AKAP1Q92667 903 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIG1-221ENST00000613670 FAM46AQ96IP4 442 aaKnown RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 NEUROD4Q9HD90 331 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 SDK1Q7Z5N4 2213 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 TRBV23OR9-2A0A075B6M9 112 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 LOC105369274A0A096LPK9 316 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 FAM183AA6NL82 134 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 PRKYO43930 277 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 RPN2P04844 631 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 FURINP09958 794 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 PTPN6P29350 595 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 XCR1P46094 333 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 GNA13Q14344 377 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 FAM46CQ5VWP2 391 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 OR4N4Q8N0Y3 316 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 FIBINQ8TAL6 211 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 XKR8Q9H6D3 395 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 GALNT9Q9HCQ5 603 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CSNK1G3Q9Y6M4 447 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 ERI3O43414 337 aaKnown RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 TSPAN9O75954 239 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 PCCBP05166 539 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 WASP42768 502 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 ATP12AP54707 1039 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CTBP2P56545 445 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 MLLT11Q13015 90 aaPredicted RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 ANGPT1Q15389 498 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 ANKRD54Q6NXT1 300 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 C11orf88Q6PI97 169 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 SLCO4C1Q6ZQN7 724 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 ANKK1Q8NFD2 765 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 KLK6Q92876 244 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CDCA4Q9BXL8 241 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 KCNN2Q9H2S1 579 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CCDC88CQ9P219 2028 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 A0A1W2PQ45 241 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 A0A1W2PQY0 241 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 AKR7A2O43488 359 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ZNF821O75541 412 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 ALAS2P22557 587 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 DDOSTP39656 456 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 RPA4Q13156 261 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 FGFBP1Q14512 234 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 SLC8B1Q6J4K2 584 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 FGD2Q7Z6J4 655 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 AMZ2Q86W34 360 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 SLC7A13Q8TCU3 470 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 BCL7CQ8WUZ0 217 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 MSANTD3Q96H12 275 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 OR4K3Q96R72 315 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 SPATA6Q9NWH7 488 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 GTF2A1LQ9UNN4 478 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 J3QLW9 94 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 FCER2P06734 321 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ZNF19P17023 458 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ACSL1P33121 698 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 MRPL58Q14197 206 aaKnown RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 TRAM1L1Q8N609 369 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 CHTF18Q8WVB6 975 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 C12orf66Q96MD2 445 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 DPCDQ9BVM2 203 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 PAK6Q9NQU5 681 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 IL36AQ9UHA7 158 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 NDRG2Q9UN36 371 aaKnown RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 TRBV5-4A0A0C4DH59 114 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 TBC1D3BA6NDS4 549 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 H3BQ06 376 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 GNB5O14775 395 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ALPPP05187 535 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 GSTM3P21266 225 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 KELP23276 732 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 CLCNKAP51800 687 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 IRF5Q13568 498 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 FAM205BPQ63HN1 556 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 WDR53Q7Z5U6 358 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 TOMM5Q8N4H5 51 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 TREX2Q9BQ50 279 aaPredicted RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 TMEM175Q9BSA9 504 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ELAC1Q9H777 363 aaKnown RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 MRPL15Q9P015 296 aaKnown RBP11.94□□□□□ -0.5
LIG1-221ENST00000613670 TBC1D24Q9ULP9 559 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 ZNF780BQ9Y6R6 833 aa11.94□□□□□ -0.5
LIG1-221ENST00000613670 HYKKA2RU49 373 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ZAR1LA6NP61 321 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 B4DXG7 233 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 GFYI3L273 518 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SCN2BO60939 215 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 IL1AP01583 271 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ELAVL4P26378 380 aaKnown RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 ACVR1BP36896 505 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ETV5P41161 510 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 KHKP50053 298 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ETV1P50549 477 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms