RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RYDENQ9NUL5 291 aaKnown RBP15.6■□□□□ 0.09
TRIM28-215ENST00000601150 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-215ENST00000601150 RAP2CQ9Y3L5 183 aa15.6■□□□□ 0.09
TRIM28-215ENST00000601150 RP1L1Q8IWN7 2480 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 C2orf92A0A1B0GVN3 265 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 SKAP2O75563 359 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 EDN3P14138 238 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 S1PR1P21453 382 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 TACR1P25103 407 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 PTGER1P34995 402 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 SLC1A6P48664 564 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 WDR4P57081 412 aaKnown RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 STX3Q13277 289 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 MRPL49Q13405 166 aaKnown RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ELOAQ14241 798 aaKnown RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 LTB4RQ15722 352 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 HLA-DQA1Q5Y7H0 255 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 RTL4Q6ZR62 310 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 MDGA2Q7Z553 956 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 TICAM1Q8IUC6 712 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 CCDC116Q8IYX3 515 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ST6GALNAC3Q8NDV1 305 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ZNF675Q8TD23 568 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 CTHRC1Q96CG8 243 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 BBS4Q96RK4 519 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 SLX1AQ9BQ83 275 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ZNF395Q9H8N7 513 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-215ENST00000601150 NKIRAS1Q9NYS0 192 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 TAS2R7Q9NYW3 318 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 BCAP29Q9UHQ4 241 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ZNF639Q9UID6 485 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 ESPL1Q14674 2120 aa15.59■□□□□ 0.09
TRIM28-215ENST00000601150 EXPH5Q8NEV8 1989 aa15.58■□□□□ 0.09
TRIM28-215ENST00000601150 ASPDHA6ND91 283 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 ANKUB1A6NFN9 424 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF354AO60765 605 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-215ENST00000601150 NADKO95544 446 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-215ENST00000601150 H2AFXP16104 143 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-215ENST00000601150 SDC1P18827 310 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 MPIP34949 423 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 CEBPEQ15744 281 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 ATP6AP1LQ52LC2 224 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 HDXQ7Z353 690 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 FAM9CQ8IZT9 166 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 KIRREL3Q8IZU9 778 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF781Q8N8C0 355 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 MGARPQ8TDB4 240 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 TP53INP1Q96A56 240 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 EGLN2Q96KS0 407 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 SGCZQ96LD1 299 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 C3orf30Q96M34 536 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 FRMD6Q96NE9 622 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 EXO1Q9UQ84 846 aaKnown RBP15.58■□□□□ 0.08
TRIM28-215ENST00000601150 CFL2Q9Y281 166 aa15.58■□□□□ 0.08
TRIM28-215ENST00000601150 SPENQ96T58 3664 aaKnown RBP15.58■□□□□ 0.08
TRIM28-215ENST00000601150 ATP6AP2A0A1C7CYW4 349 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 MYO1GB0I1T2 1018 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 KLRC4-KLRK1H3BQV0 150 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 PEX11AO75192 247 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ATP6AP2O75787 350 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 BCKDHAP12694 445 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 PCSK2P16519 638 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 MST1P26927 711 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 MAPK1P28482 360 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 SOX18P35713 384 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ASMTP46597 345 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 RPL14P50914 215 aaKnown RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 NR0B1P51843 470 aaKnown RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 TDGF1P3P51864 188 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 BST1Q10588 318 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 EXOSC7Q15024 291 aaKnown RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 PRSS53Q2L4Q9 553 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF791Q3KP31 576 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 TRMT12Q53H54 448 aaKnown RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF628Q5EBL2 1059 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 SULF2Q8IWU5 870 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 DND1Q8IYX4 353 aaKnown RBP15.57■□□□□ 0.08
TRIM28-215ENST00000601150 TAGAPQ8N103 731 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ZNF441Q8N8Z8 693 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 GOLM1Q8NBJ4 401 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 POGLUT1Q8NBL1 392 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 PSD4Q8NDX1 1056 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 OR9A2Q8NGT5 310 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 C16orf52Q8NHV5 167 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ADIPOR1Q96A54 375 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ARL8AQ96BM9 186 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 TUBGCP3Q96CW5 907 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ERP27Q96DN0 273 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 TSSK3Q96PN8 268 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 SORT1Q99523 831 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 C20orf27Q9GZN8 174 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 GIMAP2Q9UG22 337 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 HAO1Q9UJM8 370 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 SVILO95425 2214 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 FLNCQ14315 2725 aa15.57■□□□□ 0.08
TRIM28-215ENST00000601150 ZGRF1Q86YA3 2104 aa15.56■□□□□ 0.08
TRIM28-215ENST00000601150 PEX1O43933 1283 aa15.56■□□□□ 0.08
TRIM28-215ENST00000601150 BCAS2O75934 225 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-215ENST00000601150 CBX7O95931 251 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms