RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TRPC4Q9UBN4 977 aa17.38■□□□□ 0.37
UPF1-210ENST00000600689 CLCA2Q9UQC9 943 aa17.38■□□□□ 0.37
UPF1-210ENST00000600689 SHISA3A0PJX4 238 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 RAB36O95755 333 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 EPHX1P07099 455 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ENPP1P22413 925 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 IMPA1P29218 277 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 AGFG1P52594 562 aaKnown RBP17.37■□□□□ 0.37
UPF1-210ENST00000600689 IDNKQ5T6J7 187 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 PGBD2Q6P3X8 592 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 WASH2PQ6VEQ5 465 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ZNF730Q6ZMV8 503 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 PLCZ1Q86YW0 608 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 TCTE3Q8IZS6 198 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 DCAF4L2Q8NA75 395 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 BEST4Q8NFU0 473 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 OR4F15Q8NGB8 312 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 OR5D16Q8NGK9 328 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 RNFT2Q96EX2 444 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 GPA33Q99795 319 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 NLNQ9BYT8 704 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 SEC14L3Q9UDX4 400 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ATP6V1HQ9UI12 483 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 KCNE2Q9Y6J6 123 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 SYNDIG1LA6NDD5 238 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ANHXE9PGG2 379 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ZNF197O14709 1029 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 FRS3O43559 492 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 GREM1O60565 184 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 TOXO94900 526 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 GNRH1P01148 92 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 FURINP09958 794 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ITGB7P26010 798 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 DGKGP49619 791 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 VEGFBP49765 207 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 AP1S2P56377 157 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ZNF630Q2M218 657 aaPredicted RBP17.37■□□□□ 0.37
UPF1-210ENST00000600689 CRB2Q5IJ48 1285 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 GRHL2Q6ISB3 625 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 REEP3Q6NUK4 255 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 GDPGP1Q6ZNW5 385 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 OR2AP1Q8NGE2 309 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ALG14Q96F25 216 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 MSLNLQ96KJ4 702 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 MTG2Q9H4K7 406 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 ENOPH1Q9UHY7 261 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 MGAT4AQ9UM21 535 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 COL4A6Q14031 1691 aa17.37■□□□□ 0.37
UPF1-210ENST00000600689 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 LANCL1O43813 399 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 AKAP8O43823 692 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 ORC5O43913 435 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 GPR37L1O60883 481 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ADAP00813 363 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ARAFP10398 606 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 OR4M2Q8NGB6 313 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 POF1BQ8WVV4 589 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 EXOSC8Q96B26 276 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 TBX5Q99593 518 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SPATA9Q9BWV2 254 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 PLA2G12AQ9BZM1 189 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 GULP1Q9UBP9 304 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 PLAGL1Q9UM63 463 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 GSTK1Q9Y2Q3 226 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 LOC105369274A0A096LPK9 316 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SLC28A2O43868 658 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 HLA-DMAP28067 261 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SRP9P49458 86 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 MANFP55145 182 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 ABATP80404 500 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SPIN4Q56A73 249 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 PODNL1Q6PEZ8 512 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 Q6ZVU0 165 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 OR4N4Q8N0Y3 316 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SPERTQ8NA61 448 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 NACC2Q96BF6 587 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SCRN2Q96FV2 425 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SENP5Q96HI0 755 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 FCRL1Q96LA6 429 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ZNF582Q96NG8 517 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 IL17FQ96PD4 163 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 DHRS9Q9BPW9 319 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SUV39H2Q9H5I1 410 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ZNF624Q9P2J8 865 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 MRPS7Q9Y2R9 242 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 DOCK6Q96HP0 2047 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 TEX28O15482 410 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 WNT4P56705 351 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 WDR5P61964 334 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 EEF1A2Q05639 463 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 C19orf57Q0VDD7 668 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ILKQ13418 452 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 FGFBP1Q14512 234 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 SLC39A5Q6ZMH5 540 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 COMTD1Q86VU5 262 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 CMTM8Q8IZV2 173 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 NEIL3Q8TAT5 605 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ZNF431Q8TF32 576 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 UFD1Q92890 307 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 C11orf24Q96F05 449 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms