RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 BTKQ06187 659 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 MAPKAPK3Q16644 382 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 EIF2S3LQ2VIR3 472 aaKnown RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 RNFT1Q5M7Z0 435 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 NOXRED1Q6NXP6 359 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 RTL4Q6ZR62 310 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 DND1Q8IYX4 353 aaKnown RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 CPSF7Q8N684 471 aaKnown RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 C16orf52Q8NHV5 167 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 SLC22A8Q8TCC7 542 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 SREK1Q8WXA9 508 aaKnown RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 TP53INP1Q96A56 240 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 ERP27Q96DN0 273 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 PKNOX2Q96KN3 472 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 SGCZQ96LD1 299 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 CCT7Q99832 543 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 OR10A5Q9H207 317 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 LRTM1Q9HBL6 345 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 TIMMDC1Q9NPL8 285 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 SLC35C2Q9NQQ7 365 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 DEPPQ9NTK1 212 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 HAO1Q9UJM8 370 aa14.91□□□□□ -0.02
TRIM28-213ENST00000598355 POLR3HQ9Y535 204 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-213ENST00000598355 MYO7BQ6PIF6 2116 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 PIP5K1BO14986 540 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 WISP2O76076 250 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 CBX7O95931 251 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 SERPINE1P05121 402 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 STSP08842 583 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 FBXO45P0C2W1 286 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 NT5EP21589 574 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 GPX3P22352 226 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 MEOX1P50221 254 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 LTB4RQ15722 352 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF628Q5EBL2 1059 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 SH2D4BQ5SQS7 431 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 FHL5Q5TD97 284 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 FAM180BQ6P0A1 224 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 FAM111BQ6SJ93 734 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 IL20RBQ6UXL0 311 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 SULF2Q8IWU5 870 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 TLCD1Q96CP7 247 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 SPACA9Q96E40 222 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-213ENST00000598355 GPR137Q96N19 417 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 DTX4Q9Y2E6 619 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 TMED5Q9Y3A6 229 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 ZNF780BQ9Y6R6 833 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 FREM3P0C091 2139 aa14.9□□□□□ -0.02
TRIM28-213ENST00000598355 PCNX1Q96RV3 2341 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 SETXQ7Z333 2677 aaKnown RBP14.89□□□□□ -0.03
TRIM28-213ENST00000598355 WIPF3A6NGB9 483 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 MYO1GB0I1T2 1018 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 TMEM114B3SHH9 223 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 PEX1O43933 1283 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 TBX19O60806 448 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 SEMA7AO75326 666 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 IFI6P09912 130 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 MYZAPP0CAP1 466 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 ZNF24P17028 368 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 SDC1P18827 310 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 TACR1P25103 407 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 SLC18A1P54219 525 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 ELOAQ14241 798 aaKnown RBP14.89□□□□□ -0.03
TRIM28-213ENST00000598355 NTRK2Q16620 822 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 PRSS53Q2L4Q9 553 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 RFTN2Q52LD8 501 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-213ENST00000598355 C6orf163Q5TEZ5 329 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 NUDCD3Q8IVD9 361 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 CHERPQ8IWX8 916 aaKnown RBP14.89□□□□□ -0.03
TRIM28-213ENST00000598355 PAQR8Q8TEZ7 354 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 GAL3ST4Q96RP7 486 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 ZDHHC2Q9UIJ5 367 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 ERVK-11Q9UQG0 969 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 FIS1Q9Y3D6 152 aa14.89□□□□□ -0.03
TRIM28-213ENST00000598355 A0A0G2JMM0 328 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 C2orf92A0A1B0GVN3 265 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 A0A1W2PPB8 328 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 A0A1W2PRS3 328 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 KIR3DP1A8MWS1 328 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 KLRC4-KLRK1H3BQV0 150 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 ITM2AO43736 263 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PLOD3O60568 738 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 SEC22BO75396 215 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 SNUPNO95149 360 aaKnown RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 LINC00032P0C843 101 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 RNF224P0DH78 156 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 CCL3P10147 92 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PCSK2P16519 638 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PTGER1P34995 402 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 EMDP50402 254 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 KCNK10P57789 538 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 RPL38P63173 70 aaKnown RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 ALDH6A1Q02252 535 aaKnown RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 C2orf80Q0P641 193 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PDE7AQ13946 482 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 KRTCAP3Q53RY4 240 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 BNC2Q6ZN30 1099 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 TICAM1Q8IUC6 712 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 SIMC1Q8NDZ2 872 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms