RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 OR10A5Q9H207 317 aa12.82□□□□□ -0.36
UPF1-205ENST00000598209 ZNF395Q9H8N7 513 aaPredicted RBP12.82□□□□□ -0.36
UPF1-205ENST00000598209 TIMMDC1Q9NPL8 285 aa12.82□□□□□ -0.36
UPF1-205ENST00000598209 MIEF1Q9NQG6 463 aa12.82□□□□□ -0.36
UPF1-205ENST00000598209 SLC35C2Q9NQQ7 365 aa12.82□□□□□ -0.36
UPF1-205ENST00000598209 WBP11Q9Y2W2 641 aaKnown RBP12.82□□□□□ -0.36
UPF1-205ENST00000598209 KLF13Q9Y2Y9 288 aaPredicted RBP12.82□□□□□ -0.36
UPF1-205ENST00000598209 MYO18BQ8IUG5 2567 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 C2orf92A0A1B0GVN3 265 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 SKAP2O75563 359 aaPredicted RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 ZIC2O95409 532 aaPredicted RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 NADKO95544 446 aaPredicted RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 GRK2P25098 689 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 TACR1P25103 407 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 MST1P26927 711 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 SLC1A6P48664 564 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 TDGF1P3P51864 188 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 WDR4P57081 412 aaKnown RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 ELOAQ14241 798 aaKnown RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 EXOSC7Q15024 291 aaKnown RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 PRSS53Q2L4Q9 553 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 EIF2S3LQ2VIR3 472 aaKnown RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 RFTN2Q52LD8 501 aaPredicted RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 XKR7Q5GH72 579 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 HLA-DQA1Q5Y7H0 255 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 IKBIPQ70UQ0 350 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 SLC15A4Q8N697 577 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 PSD4Q8NDX1 1056 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 ZNF675Q8TD23 568 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 MGARPQ8TDB4 240 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 CTHRC1Q96CG8 243 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 EGLN2Q96KS0 407 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 PPP3R2Q96LZ3 170 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 C3orf30Q96M34 536 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 FRMD6Q96NE9 622 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 BBS4Q96RK4 519 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 CCT7Q99832 543 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 C20orf27Q9GZN8 174 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 BCAP29Q9UHQ4 241 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 ZNF639Q9UID6 485 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 EXO1Q9UQ84 846 aaKnown RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 TMED5Q9Y3A6 229 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 UBR5O95071 2799 aaPredicted RBP12.81□□□□□ -0.36
UPF1-205ENST00000598209 TENM4Q6N022 2769 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 NINQ8N4C6 2090 aa12.81□□□□□ -0.36
UPF1-205ENST00000598209 HIVEP3Q5T1R4 2406 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 ATP6AP2A0A1C7CYW4 349 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 KLRC4-KLRK1H3BQV0 150 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 PEX11AO75192 247 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 ATP6AP2O75787 350 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 PCSK2P16519 638 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 SDC1P18827 310 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 SOX18P35713 384 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 MEOX1P50221 254 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 NR0B1P51843 470 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 SLC18A1P54219 525 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 MRPS35P82673 323 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 ALDH6A1Q02252 535 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 DUSP8Q13202 625 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 STX3Q13277 289 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 CEBPEQ15744 281 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 TRMT12Q53H54 448 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 ZNF628Q5EBL2 1059 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 AGBL2Q5U5Z8 902 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 LYPD8Q6UX82 237 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 RTL4Q6ZR62 310 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 SULF2Q8IWU5 870 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 FAM9CQ8IZT9 166 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 CPSF7Q8N684 471 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 ZNF781Q8N8C0 355 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 ZNF441Q8N8Z8 693 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 GOLM1Q8NBJ4 401 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 OR52R1Q8NGF1 315 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 OR9A2Q8NGT5 310 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 C16orf52Q8NHV5 167 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 PRR7Q8TB68 274 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 GFM2Q969S9 779 aaKnown RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 SGCZQ96LD1 299 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 TSSK3Q96PN8 268 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 SORT1Q99523 831 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 ARGLU1Q9NWB6 273 aaPredicted RBP12.8□□□□□ -0.36
UPF1-205ENST00000598209 TAS2R7Q9NYW3 318 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 GIMAP2Q9UG22 337 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 RAP2CQ9Y3L5 183 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 GTF3C1Q12789 2109 aa12.8□□□□□ -0.36
UPF1-205ENST00000598209 RELNP78509 3460 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 MYO1GB0I1T2 1018 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 PEX1O43933 1283 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 SNUPNO95149 360 aaKnown RBP12.79□□□□□ -0.36
UPF1-205ENST00000598209 LRATO95237 230 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 CBX7O95931 251 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 H2AFXP16104 143 aaPredicted RBP12.79□□□□□ -0.36
UPF1-205ENST00000598209 GPX3P22352 226 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 NTSP30990 170 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 MPIP34949 423 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 GPR85P60893 370 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 SRSF1Q07955 248 aaKnown RBP eCLIP12.79□□□□□ -0.364e-11■■□□□ 13.4
UPF1-205ENST00000598209 BST1Q10588 318 aa12.79□□□□□ -0.36
UPF1-205ENST00000598209 ZNF791Q3KP31 576 aaPredicted RBP12.79□□□□□ -0.36
UPF1-205ENST00000598209 ATP6AP1LQ52LC2 224 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms