RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 OR7G1Q8NGA0 311 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 OR5AK3PQ8NH89 298 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 PPWD1Q96BP3 646 aaKnown RBP14.27□□□□□ -0.13
TRIM28-209ENST00000597423 CCDC124Q96CT7 223 aaKnown RBP14.27□□□□□ -0.13
TRIM28-209ENST00000597423 SLC35G5Q96KT7 338 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 ART5Q96L15 291 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 VN1R1Q9GZP7 353 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 EPS8L2Q9H6S3 715 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 POLR1BQ9H9Y6 1135 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 CXorf21Q9HAI6 301 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 CTSFQ9UBX1 484 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 C19orf25Q9UFG5 118 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-209ENST00000597423 CLCA3PQ9Y6N3 262 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 IGKV3D-11A0A0A0MRZ8 115 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 TCRBV16S1A1N1A0A5B0 115 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 TTC36A6NLP5 189 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 IGHEP01854 428 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CD82P27701 267 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 SLC5A2P31639 672 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 KHKP50053 298 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CLDN6P56747 220 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 DUSP2Q05923 314 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 SELPLGQ14242 412 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 ELAVL1Q15717 326 aaKnown RBP14.26□□□□□ -0.13
TRIM28-209ENST00000597423 LTB4RQ15722 352 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.26□□□□□ -0.13
TRIM28-209ENST00000597423 ATAD3BQ5T9A4 648 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 MRPL14Q6P1L8 145 aaKnown RBP14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CALHM3Q86XJ0 350 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PRSS58Q8IYP2 241 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 MICU2Q8IYU8 434 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CLEC4FQ8N1N0 589 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 METTL25Q8N6Q8 603 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 C11orf65Q8NCR3 313 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PNPT1Q8TCS8 783 aaKnown RBP14.26□□□□□ -0.13
TRIM28-209ENST00000597423 MS4A4EQ96PG1 132 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 ACTRT3Q9BYD9 372 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 TRIM8Q9BZR9 551 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 TRIM4Q9C037 500 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CHST8Q9H2A9 424 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 IKZF5Q9H5V7 419 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PIF1Q9H611 641 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 ADAP2Q9NPF8 381 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PNO1Q9NRX1 252 aaKnown RBP14.26□□□□□ -0.13
TRIM28-209ENST00000597423 MAGEL2Q9UJ55 1249 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PACSIN3Q9UKS6 424 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 CFL2Q9Y281 166 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF451Q9Y4E5 1061 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 SNX13Q9Y5W8 968 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 PCNX2A6NKB5 2137 aa14.26□□□□□ -0.13
TRIM28-209ENST00000597423 MYOCOSA0A1B0GUC4 107 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 A0A1W2PS29 197 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 C17orf105B2RV13 164 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 IDSB3KWA1 339 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 C9orf172C9J069 976 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 UPK1AO00322 258 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 BRINP1O60477 761 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ALOX12BO75342 701 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 RECKO95980 971 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 RAB40ALP0C0E4 278 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 OR4D2P58180 307 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 DSTNP60981 165 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 RPS15P62841 145 aaKnown RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 VEZF1Q14119 521 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 FLOT2Q14254 428 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF267Q14586 743 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ZNHIT3Q15649 155 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF630Q2M218 657 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 INTS11Q5TA45 600 aaKnown RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF517Q6ZMY9 492 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 TMPRSS7Q7RTY8 843 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 LAPTM4BQ86VI4 370 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 PTRH1Q86Y79 214 aaKnown RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 OR7G2Q8NG99 324 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 OR14A16Q8NHC5 309 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 MIPOL1Q8TD10 442 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ADAMTS15Q8TE58 950 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 JADE3Q92613 823 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 CTHRC1Q96CG8 243 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 VPS50Q96JG6 964 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 CRB3Q9BUF7 120 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 TMEM38AQ9H6F2 299 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 SOX17Q9H6I2 414 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-209ENST00000597423 EXD2Q9NVH0 621 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 MAT2BQ9NZL9 334 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ACTR3BQ9P1U1 418 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 PRODH2Q9UF12 536 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 C3orf18Q9UK00 162 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 ACSL6Q9UKU0 697 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 NEUROG3Q9Y4Z2 214 aa14.25□□□□□ -0.13
TRIM28-209ENST00000597423 OR2W5A6NFC9 320 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 C5orf58C9J3I9 102 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 ASNA1O43681 348 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 IFNA14P01570 189 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 HMGN2P05204 90 aaKnown RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 BMP2P12643 396 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 ETFAP13804 333 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 GZMMP51124 257 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 PGDP52209 483 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 ACTR3P61158 418 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms