RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ACTR8Q9H981 624 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CARS2Q9HA77 564 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 C3orf14Q9HBI5 128 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ARNT2Q9HBZ2 717 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 SMURF1Q9HCE7 757 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ATP13A1Q9HD20 1204 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 CRTAC1Q9NQ79 661 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PIGVQ9NUD9 493 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PLCXD1Q9NUJ7 323 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ACOXLQ9NUZ1 547 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ADPRHL2Q9NX46 363 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ASIC5Q9NY37 505 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TAS2R9Q9NYW1 312 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 ERVK-18Q9QC07 812 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 UBA2Q9UBT2 640 aaPredicted RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 SLCO3A1Q9UIG8 710 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 STOML2Q9UJZ1 356 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 RIMKLBQ9ULI2 386 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 NDRG4Q9ULP0 352 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 USP22Q9UPT9 525 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 NEU3Q9UQ49 428 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 RNF6Q9Y252 685 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 PRELID1Q9Y255 219 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 TMA7Q9Y2S6 64 aaKnown RBP3.94□□□□□ -1.78
LIG3-211ENST00000588713 NME7Q9Y5B8 376 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 N6AMT1Q9Y5N5 214 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 AP1M2Q9Y6Q5 423 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 V9GYQ6 96 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 POLEQ07864 2286 aa3.94□□□□□ -1.78
LIG3-211ENST00000588713 VPS13CQ709C8 3753 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 DOCK4Q8N1I0 1966 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 TRBV5-3A0A0A0MS03 114 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ELOVL7A1L3X0 281 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 HMX3A6NHT5 357 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SUPT3HB4E1H0 165 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 H3BMM5 538 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MASP2O00187 686 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 CCRL2O00421 344 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 CXCR6O00574 342 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 GNGT2O14610 69 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 DSCR3O14972 297 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 POLR1CO15160 346 aaPredicted RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 GSTA4O15217 222 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SHOXO15266 292 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 KLK8O60259 260 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SEC22BO75396 215 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MTRF1O75570 445 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 STC2O76061 302 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 TPPPO94811 219 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SLITRK5O94991 958 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MFN2O95140 757 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 PCDH8O95206 1070 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MT-CO1P00395 513 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 JCHAINP01591 159 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 KLKB1P03952 638 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 FYNP06241 537 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MTHFD2P13995 350 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 CTSEP14091 401 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ALOX12P18054 663 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 FPR1P21462 350 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 WARSP23381 471 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 LMO2P25791 158 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ERP29P30040 261 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 CORO1AP31146 461 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 CD70P32970 193 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 GGT5P36269 586 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ATP5C1P36542 298 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 ADH7P40394 386 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MAP2K4P45985 399 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 CLK3P49761 638 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 SEPHS1P49903 392 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SMSP52788 366 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 FOXA1P55317 472 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 OR1D5P58170 312 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 DAOAP59103 153 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 RPS18P62269 152 aaKnown RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 ADORA2A-AS1P86434 159 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 DEFA6Q01524 100 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 NRG1Q02297 640 aaPredicted RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 PIGFQ07326 219 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 PCDH1Q08174 1060 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MYBPHQ13203 477 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MAD2L1Q13257 205 aaPredicted RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 IKZF1Q13422 519 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ASAH1Q13510 395 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 DGCR6Q14129 220 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 TIGD6Q17RP2 521 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ZNF284Q2VY69 593 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 C5orf22Q49AR2 442 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 CDONQ4KMG0 1287 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 INO80DQ53TQ3 878 aaPredicted RBP3.93□□□□□ -1.78
LIG3-211ENST00000588713 ARMCX4Q5H9R4 360 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 SNAP47Q5SQN1 464 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 C10orf120Q5SQS8 335 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 NKAIN2Q5VXU1 208 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 ATG9BQ674R7 924 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 KDM4DQ6B0I6 523 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 PM20D1Q6GTS8 502 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 NEK5Q6P3R8 708 aa3.93□□□□□ -1.78
LIG3-211ENST00000588713 MTFR2Q6P444 385 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms