RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 DAZAP2Q15038 168 aaPredicted RBP19.29■□□□□ 0.68
VPS53-216ENST00000574029 ACAP2Q15057 778 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 CEBPEQ15744 281 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 FAM83EQ2M2I3 478 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 NHSL2Q5HYW2 709 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 BICRALQ6AI39 1079 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 VASNQ6EMK4 673 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 GTF2H2CQ6P1K8 395 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 GOLGA7Q7Z5G4 137 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 PM20D2Q8IYS1 436 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 ZNF615Q8N8J6 731 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 L3MBTL4Q8NA19 623 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 ADIPOR1Q96A54 375 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 NTNG2Q96CW9 530 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 IPPKQ9H8X2 491 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 MTRF1LQ9UGC7 380 aaKnown RBP19.29■□□□□ 0.68
VPS53-216ENST00000574029 EDARQ9UNE0 448 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 PLEKHA6Q9Y2H5 1048 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 C15orf41Q9Y2V0 281 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 RNF11Q9Y3C5 154 aa19.29■□□□□ 0.68
VPS53-216ENST00000574029 KIAA1549Q9HCM3 1950 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 PGRMC2O15173 223 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 URI1O94763 535 aaPredicted RBP19.28■□□□□ 0.68
VPS53-216ENST00000574029 ACSL3O95573 720 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 IL2RAP01589 272 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 GBAP04062 536 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 C2P06681 752 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 CT62P0C5K7 136 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 TMED10P49755 219 aaKnown RBP19.28■□□□□ 0.68
VPS53-216ENST00000574029 NEK2P51955 445 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 ZNF136P52737 540 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 PLTPP55058 493 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 PPP2R2AP63151 447 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 CAV1Q03135 178 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 C2orf54Q08AI8 447 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 SF3B4Q15427 424 aaKnown RBP eCLIP19.28■□□□□ 0.685e-6■■■■■ 28.2
VPS53-216ENST00000574029 WHAMMP3Q1A5X7 153 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 HLA-DQA1Q5Y7H0 255 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 NSUN5P2Q63ZY6 315 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 PACS2Q86VP3 889 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 GALNT12Q8IXK2 581 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 GOT1L1Q8NHS2 421 aaPredicted RBP19.28■□□□□ 0.68
VPS53-216ENST00000574029 HSPBAP1Q96EW2 488 aa19.28■□□□□ 0.68
VPS53-216ENST00000574029 TEX10Q9NXF1 929 aaPredicted RBP19.28■□□□□ 0.68
VPS53-216ENST00000574029 HMX2A2RU54 273 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 CD8B2A6NJW9 211 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 SEMA3DO95025 777 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 PIK3R1P27986 724 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 CASP3P42574 277 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 PIK3CGP48736 1102 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 RPP38P78345 283 aaKnown RBP19.27■□□□□ 0.68
VPS53-216ENST00000574029 GUCY2DQ02846 1103 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 METTL2BQ6P1Q9 378 aaKnown RBP19.27■□□□□ 0.68
VPS53-216ENST00000574029 CCDC25Q86WR0 208 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 C17orf47Q8NEP4 570 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 FBXO25Q8TCJ0 367 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 MBD6Q96DN6 1003 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 TMEM41AQ96HV5 264 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 GPR78Q96P69 363 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 GNRHR2Q96P88 292 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 ALPK1Q96QP1 1244 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 SERPINI1Q99574 410 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 OR10A5Q9H207 317 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 SLC6A5Q9Y345 797 aa19.27■□□□□ 0.68
VPS53-216ENST00000574029 TNPO3Q9Y5L0 923 aaKnown RBP19.27■□□□□ 0.68
VPS53-216ENST00000574029 KLHL2O95198 593 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 SIX3O95343 332 aaPredicted RBP19.26■□□□□ 0.67
VPS53-216ENST00000574029 CLDN9O95484 217 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 HOXB4P17483 251 aaPredicted RBP19.26■□□□□ 0.67
VPS53-216ENST00000574029 BMP7P18075 431 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 TACR1P25103 407 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 MASP1P48740 699 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 NRG3P56975 720 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 MROH9Q5TGP6 573 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 ZDHHC24Q6UX98 284 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 CAMKMTQ7Z624 323 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 OR7G1Q8NGA0 311 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 OR4K14Q8NGD5 310 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 ZNF592Q92610 1267 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 WDYHV1Q96HA8 205 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 UGT2B28Q9BY64 529 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 CAMK2AQ9UQM7 478 aa19.26■□□□□ 0.67
VPS53-216ENST00000574029 UTP11Q9Y3A2 253 aaKnown RBP19.26■□□□□ 0.67
VPS53-216ENST00000574029 ZNF469Q96JG9 3925 aaPredicted RBP19.26■□□□□ 0.67
VPS53-216ENST00000574029 MBD3L4A6NDZ8 208 aaPredicted RBP19.25■□□□□ 0.67
VPS53-216ENST00000574029 MBD3L3A6NE82 208 aaPredicted RBP19.25■□□□□ 0.67
VPS53-216ENST00000574029 MBD3L5A6NJ08 208 aaPredicted RBP19.25■□□□□ 0.67
VPS53-216ENST00000574029 OR7A17O14581 309 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 PTPN6P29350 595 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 FOXD4Q12950 439 aaPredicted RBP19.25■□□□□ 0.67
VPS53-216ENST00000574029 TRADDQ15628 312 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 PAMR1Q6UXH9 720 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 PRR22Q8IZ63 422 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 MBD3L2Q8NHZ7 208 aaPredicted RBP19.25■□□□□ 0.67
VPS53-216ENST00000574029 KIF18AQ8NI77 898 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 TRIB1Q96RU8 372 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 EPB41L4BQ9H329 900 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 DLL4Q9NR61 685 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 JKAMPQ9P055 326 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 CPSF2Q9P2I0 782 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms