RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ERVK-8P63133 956 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 SETDB1Q15047 1291 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 NRF1Q16656 503 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 SPRED3Q2MJR0 410 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 ELOA3BQ3SY89 546 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 DNAJC14Q6Y2X3 702 aaPredicted RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 CHMP1BQ7LBR1 199 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 LUZP1Q86V48 1076 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 WFDC8Q8IUA0 241 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 RFLNBQ8N5W9 214 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 BBOF1Q8ND07 529 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 ELOA3Q8NG57 546 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 PPWD1Q96BP3 646 aaKnown RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 C11orf24Q96F05 449 aaPredicted RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 LINGO1Q96FE5 620 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 MAPKAP1Q9BPZ7 522 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 ERVK-6Q9BXR3 956 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 PRDM7Q9NQW5 492 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 GDF2Q9UK05 429 aaPredicted RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 PROCRQ9UNN8 238 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 ERVK-19Q9WJR5 959 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 RNF115Q9Y4L5 304 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 C2orf92A0A1B0GVN3 265 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 SERINC4A6NH21 518 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 TCF21O43680 179 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 SSX4O60224 188 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 CBR3O75828 277 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 GUCA1CO95843 209 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 ENO2P09104 434 aaPredicted RBP16.27■□□□□ 0.2
CLK3-227ENST00000570296 IGHV4-31P0DP07 118 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 KCNC1P48547 511 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 NRG3P56975 720 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 TIAL1Q01085 375 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLK3-227ENST00000570296 FAM174BQ3ZCQ3 159 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 FAM120AOSQ5T036 256 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 SLC30A6Q6NXT4 461 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 TMEM81Q6P7N7 255 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 PAQR3Q6TCH7 311 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 CLEC2AQ6UVW9 174 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 OR4N5Q8IXE1 308 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 LMNTD2Q8IXW0 634 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 RAB3IL1Q8TBN0 382 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 RHBDF1Q96CC6 855 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 KCNC2Q96PR1 638 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 GRIP2Q9C0E4 1043 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 PITHD1Q9GZP4 211 aaPredicted RBP16.27■□□□□ 0.2
CLK3-227ENST00000570296 NT5DC2Q9H857 520 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 METTL7AQ9H8H3 244 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 SERHLQ9NQF3 203 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 TAS2R13Q9NYV9 303 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 KCNS2Q9ULS6 477 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 EXO1Q9UQ84 846 aaKnown RBP16.27■□□□□ 0.2
CLK3-227ENST00000570296 SLC22A14Q9Y267 594 aa16.27■□□□□ 0.2
CLK3-227ENST00000570296 TRRAPQ9Y4A5 3859 aa16.27■□□□□ 0.19
CLK3-227ENST00000570296 ANKDD1BA6NHY2 528 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 C1GALT1C1LP0DN25 315 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 ALOX15P16050 662 aaPredicted RBP16.26■□□□□ 0.19
CLK3-227ENST00000570296 SLC25A16P16260 332 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 FAPQ12884 760 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 DHX34Q14147 1143 aaKnown RBP16.26■□□□□ 0.19
CLK3-227ENST00000570296 ZNF267Q14586 743 aaPredicted RBP16.26■□□□□ 0.19
CLK3-227ENST00000570296 BCL2A1Q16548 175 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 IL17RELQ6ZVW7 336 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 ST13P4Q8IZP2 240 aaPredicted RBP16.26■□□□□ 0.19
CLK3-227ENST00000570296 KRT78Q8N1N4 520 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 UBL4BQ8N7F7 174 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 PELOQ9BRX2 385 aaKnown RBP16.26■□□□□ 0.19
CLK3-227ENST00000570296 TAS2R10Q9NYW0 307 aa16.26■□□□□ 0.19
CLK3-227ENST00000570296 HAUS5O94927 633 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 FTCDO95954 541 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 CLPSP04118 112 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 ZSCAN5DPP0CG00 497 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 GNAZP19086 355 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 CPN2P22792 545 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 NUDT6P53370 316 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 BASP1P80723 227 aaKnown RBP16.25■□□□□ 0.19
CLK3-227ENST00000570296 CDK16Q00536 496 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 SNTA1Q13424 505 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 SLBPQ14493 270 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLK3-227ENST00000570296 EXOC3L2Q2M3D2 409 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 C4orf22Q6V702 233 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 STAC2Q6ZMT1 411 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 SLCO4C1Q6ZQN7 724 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 DEPDC4Q8N2C3 294 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 SRFBP1Q8NEF9 429 aaKnown RBP16.25■□□□□ 0.19
CLK3-227ENST00000570296 SFXN2Q96NB2 322 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 TBCDQ9BTW9 1192 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 TRAF4Q9BUZ4 470 aaPredicted RBP16.25■□□□□ 0.19
CLK3-227ENST00000570296 OR10A4Q9H209 315 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 ALG2Q9H553 416 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 RNF122Q9H9V4 155 aa16.25■□□□□ 0.19
CLK3-227ENST00000570296 MBD3O95983 291 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 FESP07332 822 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 ATP5A1P25705 553 aaKnown RBP16.24■□□□□ 0.19
CLK3-227ENST00000570296 RPS13P62277 151 aaKnown RBP16.24■□□□□ 0.19
CLK3-227ENST00000570296 GUSBP1Q15486 140 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 PGGHGQ32M88 737 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 ZNF672Q499Z4 452 aaPredicted RBP16.24■□□□□ 0.19
CLK3-227ENST00000570296 HLA-DQA1Q5Y7H0 255 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 FAM166AQ6J272 317 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms