RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 A0A0G2JN53 185 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 A8MVJ9 347 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 G3V2T6 193 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 TMX2-CTNND1H3BSU7 103 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CYR61O00622 381 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 PGRMC2O15173 223 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ADAMDEC1O15204 470 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNF749O43361 778 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 B4GAT1O43505 415 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 DENRO43583 198 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 FOXD2O60548 495 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 TIPRLO75663 272 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 OR2B3O76000 313 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNF682O95780 498 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 PDGFBP01127 241 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 GP1BAP07359 652 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CYC1P08574 325 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 TFPTP0C1Z6 253 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 SP9P0CG40 484 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 GIMD1P0DJR0 217 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CKMT1AP12532 417 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ETFAP13804 333 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CPMP14384 443 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 PVRP15151 417 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 NELFEP18615 380 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 CDH2P19022 906 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 AVPR2P30518 371 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 GRK6P43250 576 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 GABRA4P48169 554 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ITGA1P56199 1179 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 OR1D5P58170 312 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 HPCAP84074 193 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 EEF1A2Q05639 463 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 STX4Q12846 297 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 SLC14A1Q13336 389 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 RUNX2Q13950 521 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 SHBQ15464 509 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNHIT3Q15649 155 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 LRRC23Q53EV4 343 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 IFI44LQ53G44 452 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CYBRD1Q53TN4 286 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 TRIM61Q5EBN2 209 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS39-213ENST00000570062 LPCAT4Q643R3 524 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 C18orf63Q68DL7 685 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNF551Q7Z340 670 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 SPRED1Q7Z699 444 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CYP4Z1Q86W10 505 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ST13P4Q8IZP2 240 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 LGI4Q8N135 537 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 OR2L13Q8N349 312 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 LINC00471Q8N535 108 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CDRT4Q8N9R6 151 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 NUP43Q8NFH3 380 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 SUN3Q8TAQ9 357 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 FBXO30Q8TB52 745 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZCCHC10Q8TBK6 192 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ADAMTS15Q8TE58 950 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 GEMIN6Q8WXD5 167 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 RBM18Q96H35 190 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNF597Q96LX8 424 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 C10orf90Q96M02 699 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 MS4A4EQ96PG1 132 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 STACQ99469 402 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 PRRX2Q99811 253 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 RBM4BQ9BQ04 359 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 RBM4Q9BWF3 364 aaKnown RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 FAM60AQ9NP50 221 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 POLE3Q9NRF9 147 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 SIRT3Q9NTG7 399 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 TMEM74BQ9NUR3 256 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 AKAP7Q9P0M2 348 aaPredicted RBP7.49□□□□□ -1.21
VPS39-213ENST00000570062 ENOPH1Q9UHY7 261 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ZNF232Q9UNY5 417 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ERVK-11Q9UQG0 969 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 CFL2Q9Y281 166 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 ORC6Q9Y5N6 252 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 EPG5Q9HCE0 2579 aa7.49□□□□□ -1.21
VPS39-213ENST00000570062 PLXND1Q9Y4D7 1925 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 IGHV5-51A0A0C4DH38 117 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 WASHC1A8K0Z3 465 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 H0YAE9 185 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 M0QX08 132 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CASC3O15234 703 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 P2RX6O15547 441 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CHST10O43529 356 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 OR10H2O60403 315 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 E2F6O75461 281 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 RASAL1O95294 804 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 PGM3O95394 542 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CD63P08962 238 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 NR2F1P10589 423 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ZNF23P17027 643 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ZNF26P17031 533 aaPredicted RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 PEX2P28328 305 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 DNAJA1P31689 397 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 FEN1P39748 380 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 MAP2K3P46734 347 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ERFP50548 548 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CDK9P50750 372 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms