RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 KIAA0040Q15053 153 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 EBPQ15125 230 aaKnown RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 CEBPEQ15744 281 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 PDCD2Q16342 344 aaPredicted RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 MAPKAPK3Q16644 382 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 PRICKLE4Q2TBC4 344 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 UGT3A2Q3SY77 523 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SPINK14Q6IE38 97 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 SLC25A25Q6KCM7 469 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 Q6ZSR9 355 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 R3HCC1LQ7Z5L2 792 aaKnown RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 TICAM1Q8IUC6 712 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 FNDC5Q8NAU1 212 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 DNAJB8Q8NHS0 232 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 ZFP28Q8NHY6 868 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 TUBGCP3Q96CW5 907 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 MTERF3Q96E29 417 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 WWTR1Q9GZV5 400 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 OR10A5Q9H207 317 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 KLHL1Q9NR64 748 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 MAT2BQ9NZL9 334 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 PRODH2Q9UF12 536 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 BCAP29Q9UHQ4 241 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 MAPRE3Q9UPY8 281 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 EIF3LQ9Y262 564 aaKnown RBP12.04□□□□□ -0.48
CLK3-224ENST00000568605 BAHCC1Q9P281 2608 aa12.04□□□□□ -0.48
CLK3-224ENST00000568605 ATP6AP2A0A1C7CYW4 349 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 A0A1W2PS29 197 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 KLRC4-KLRK1H3BQV0 150 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 HRKO00198 91 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 PDPK1O15530 556 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 ITM2AO43736 263 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 COQ9O75208 318 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 ATP6AP2O75787 350 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 PRPS2P11908 318 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 EDN3P14138 238 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 SOX3P41225 446 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 WDR4P57081 412 aaKnown RBP12.03□□□□□ -0.48
CLK3-224ENST00000568605 PSPHP78330 225 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 KCNC4Q03721 635 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 MAP4K2Q12851 820 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 SMU1Q2TAY7 513 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 RFTN2Q52LD8 501 aaPredicted RBP12.03□□□□□ -0.48
CLK3-224ENST00000568605 RTL4Q6ZR62 310 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 GALNTL5Q7Z4T8 443 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 GOLM1Q8NBJ4 401 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 POGLUT1Q8NBL1 392 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 PSD4Q8NDX1 1056 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 C17orf47Q8NEP4 570 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLK3-224ENST00000568605 FAR1Q8WVX9 515 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 NR4A3Q92570 626 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 TP53INP1Q96A56 240 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 PPCDCQ96CD2 204 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 SGCZQ96LD1 299 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 ZNF681Q96N22 645 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 TSSK3Q96PN8 268 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 SH3GL2Q99962 352 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 THAP1Q9NVV9 213 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 TAS2R7Q9NYW3 318 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 NOP53Q9NZM5 478 aaKnown RBP12.03□□□□□ -0.48
CLK3-224ENST00000568605 HAO1Q9UJM8 370 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 NTNG1Q9Y2I2 539 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 DNAJC13O75165 2243 aa12.03□□□□□ -0.48
CLK3-224ENST00000568605 SPENQ96T58 3664 aaKnown RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 TMEM200CA6NKL6 621 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 SLCO1B7G3V0H7 640 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 TBX19O60806 448 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 PEX11AO75192 247 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 OR6B1O95007 311 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 CT62P0C5K7 136 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 TACR1P25103 407 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 NCBP2P52298 156 aaKnown RBP eCLIP12.02□□□□□ -0.499e-7■■■■□ 24.2
CLK3-224ENST00000568605 DCAF7P61962 342 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 RPP38P78345 283 aaKnown RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 IGFBP7Q16270 282 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ZNF750Q32MQ0 723 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ZNF628Q5EBL2 1059 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ZNF468Q5VIY5 522 aaPredicted RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 FAM180BQ6P0A1 224 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 IL20RBQ6UXL0 311 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 CCDC116Q8IYX3 515 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 LRRC34Q8IZ02 419 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 LIX1Q8N485 282 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ZNF615Q8N8J6 731 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ST6GALNAC3Q8NDV1 305 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ADCY4Q8NFM4 1077 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 OR9A2Q8NGT5 310 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 C16orf52Q8NHV5 167 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 DYDC1Q8WWB3 177 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 ARL8AQ96BM9 186 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 CTHRC1Q96CG8 243 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 SPACA9Q96E40 222 aaPredicted RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 ZBED6CLQ96FA7 236 aaPredicted RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 SORT1Q99523 831 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 PRPF18Q99633 342 aaKnown RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 BARD1Q99728 777 aaKnown RBP12.02□□□□□ -0.49
CLK3-224ENST00000568605 C1orf50Q9BV19 199 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 CLMPQ9H6B4 373 aa12.02□□□□□ -0.49
CLK3-224ENST00000568605 REEP4Q9H6H4 257 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms