RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KLK1P06870 262 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 RPS17P08708 135 aaKnown RBP17.44■□□□□ 0.38
VPS35-202ENST00000561713 FBXW4P57775 412 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 FOXD4Q12950 439 aaPredicted RBP17.44■□□□□ 0.38
VPS35-202ENST00000561713 WHAMMP3Q1A5X7 153 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 SLC22A10Q63ZE4 541 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 TTC19Q6DKK2 380 aaPredicted RBP17.44■□□□□ 0.38
VPS35-202ENST00000561713 GALNT12Q8IXK2 581 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 OR4F6Q8NGB9 312 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 SERPINI1Q99574 410 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 CXorf21Q9HAI6 301 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.44■□□□□ 0.38
VPS35-202ENST00000561713 ALKBH4Q9NXW9 302 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 ACAD8Q9UKU7 415 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 BOKQ9UMX3 212 aaPredicted RBP17.44■□□□□ 0.38
VPS35-202ENST00000561713 DTX4Q9Y2E6 619 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 DOCK7Q96N67 2140 aa17.44■□□□□ 0.38
VPS35-202ENST00000561713 ABCA2Q9BZC7 2435 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 TRGV5A0A0B4J1U4 118 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 STX16-NPEPL1H3BU86 382 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 FOXE1O00358 373 aaPredicted RBP17.43■□□□□ 0.38
VPS35-202ENST00000561713 STX16O14662 325 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 SMIM24O75264 130 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 PIK3R1P27986 724 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 ARFIP1P53367 373 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 CDH13P55290 713 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 WNT3P56703 355 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 SLC10A1Q14973 349 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 HYAL4Q2M3T9 481 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 TCHHL1Q5QJ38 904 aaPredicted RBP17.43■□□□□ 0.38
VPS35-202ENST00000561713 C1orf185Q5T7R7 199 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 LETMD1Q6P1Q0 360 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 WDR53Q7Z5U6 358 aaPredicted RBP17.43■□□□□ 0.38
VPS35-202ENST00000561713 ZNF441Q8N8Z8 693 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 DCAKDQ8WVC6 231 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 DOHHQ9BU89 302 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 FUT8Q9BYC5 575 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 CLEC4MQ9H2X3 399 aaPredicted RBP17.43■□□□□ 0.38
VPS35-202ENST00000561713 PLEKHA6Q9Y2H5 1048 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 IKBKGQ9Y6K9 419 aa17.43■□□□□ 0.38
VPS35-202ENST00000561713 A8MT66 165 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 KDM4EB2RXH2 506 aaPredicted RBP17.42■□□□□ 0.38
VPS35-202ENST00000561713 RBP1P09455 135 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 SBK3P0C264 359 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 SLC35E2P0CK97 266 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 NT5EP21589 574 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 IFT88Q13099 833 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 NTRK2Q16620 822 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 FAM180BQ6P0A1 224 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 TAOK1Q7L7X3 1001 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 COMMD6Q7Z4G1 85 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 RELL1Q8IUW5 271 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 DIO2Q92813 273 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 ZNF597Q96LX8 424 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 ZFP64Q9NPA5 681 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 DLL4Q9NR61 685 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 RASSF1Q9NS23 344 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 SLC12A4Q9UP95 1085 aa17.42■□□□□ 0.38
VPS35-202ENST00000561713 C2orf92A0A1B0GVN3 265 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 OR6C76A6NM76 312 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SUSD5O60279 629 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 CPMP14384 443 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 GDF1P27539 372 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SERPINB3P29508 390 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 KIR2DL3P43628 341 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SERPINB9P50453 376 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 MAPK12P53778 367 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 DUSP2Q05923 314 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 RPS6KA2Q15349 733 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 TSNAXIP1Q2TAA8 658 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SLC25A35Q3KQZ1 300 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 CCNYL2Q5T2Q4 361 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 WLSQ5T9L3 541 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 MILR1Q7Z6M3 343 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 LRRC25Q8N386 305 aaPredicted RBP17.41■□□□□ 0.38
VPS35-202ENST00000561713 MMGT1Q8N4V1 131 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SLC15A4Q8N697 577 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 SIMC1Q8NDZ2 872 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 ZNF483Q8TF39 744 aaPredicted RBP17.41■□□□□ 0.38
VPS35-202ENST00000561713 SARAFQ96BY9 339 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 RMND5BQ96G75 393 aaPredicted RBP17.41■□□□□ 0.38
VPS35-202ENST00000561713 NTMT1Q9BV86 223 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 ELOVL6Q9H5J4 265 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 CRIM1Q9NZV1 1036 aa17.41■□□□□ 0.38
VPS35-202ENST00000561713 RPH3AQ9Y2J0 694 aaPredicted RBP17.41■□□□□ 0.38
VPS35-202ENST00000561713 WDR1O75083 606 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 PDYNP01213 254 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 DNASE1P24855 282 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 XKP51811 444 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 GALNT1Q10472 559 aaPredicted RBP17.4■□□□□ 0.38
VPS35-202ENST00000561713 DUSP8Q13202 625 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 BIKQ13323 160 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 EXOSC7Q15024 291 aaKnown RBP17.4■□□□□ 0.38
VPS35-202ENST00000561713 LTB4RQ15722 352 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 GGTA1PQ4G0N0 100 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 TEX35Q5T0J7 233 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 HLA-DQA1Q5Y7H0 255 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 DESI1Q6ICB0 168 aa17.4■□□□□ 0.38
VPS35-202ENST00000561713 METTL2BQ6P1Q9 378 aaKnown RBP17.4■□□□□ 0.38
VPS35-202ENST00000561713 FAM111BQ6SJ93 734 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms