RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 XCR1P46094 333 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 KCNJ5P48544 419 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 OR1D5P58170 312 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 FHL5Q5TD97 284 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 NKAIN2Q5VXU1 208 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 TTC23Q5W5X9 447 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 PLXDC1Q8IUK5 500 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 C1orf210Q8IVY1 113 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 APLFQ8IW19 511 aaPredicted RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 SLC44A2Q8IWA5 706 aaPredicted RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 OR4N5Q8IXE1 308 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 GPR32P1Q8NGA4 272 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 ZNF675Q8TD23 568 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 KAT2AQ92830 837 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 C16orf58Q96GQ5 468 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 FBXL20Q96IG2 436 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 OR7D2Q96RA2 312 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 MBOAT4Q96T53 435 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 BARD1Q99728 777 aaKnown RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 RSPO3Q9BXY4 272 aaPredicted RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 ACTRT3Q9BYD9 372 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 RUBCNLQ9H714 662 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 NLGN3Q9NZ94 848 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 LIPT1Q9Y234 373 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 LYVE1Q9Y5Y7 322 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 ENPP4Q9Y6X5 453 aa12.11□□□□□ -0.47
SNX1-211ENST00000560829 NUP214P35658 2090 aaPredicted RBP12.11□□□□□ -0.47
SNX1-211ENST00000560829 A0A0G2JPF8 293 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 DPPA5A6NC42 116 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 DUXAA6NLW8 204 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 HNRNPCL2B2RXH8 293 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 HNRNPCL3B7ZW38 293 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 B4GAT1O43505 415 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 PLOD3O60568 738 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 AGR2O95994 175 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 FESP07332 822 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SMIM18P0DKX4 95 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 HNRNPCL4P0DMR1 293 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 TNFRSF1BP20333 461 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 PRKACGP22612 351 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 RRM2P31350 389 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 OR1E2P47887 323 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 RAD23AP54725 363 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 PUM1Q14671 1186 aaKnown RBP eCLIP12.1□□□□□ -0.47
SNX1-211ENST00000560829 EXOSC6Q5RKV6 272 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 KDM4DQ6B0I6 523 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 MFSD12Q6NUT3 480 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CDC73Q6P1J9 531 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 FAHD1Q6P587 224 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 FAM111BQ6SJ93 734 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 ZNF605Q86T29 641 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 KRT73Q86Y46 540 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SHISA5Q8N114 240 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 ANKRD9Q96BM1 317 aaPredicted RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 AHCYL2Q96HN2 611 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 DUSP23Q9BVJ7 150 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SPATA5L1Q9BVQ7 753 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 AMBRA1Q9C0C7 1298 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 TOR3AQ9H497 397 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 EXD2Q9NVH0 621 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 FAM118AQ9NWS6 357 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SOHLH2Q9NX45 425 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 C19orf53Q9UNZ5 99 aaPredicted RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 ABCA7Q8IZY2 2146 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 DSPPQ9NZW4 1301 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 A0A0A6YYC8 382 aaPredicted RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 HYKKA2RU49 373 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 FAM227AF5H4B4 570 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 H3BMH7 237 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 I3L1I5 382 aaPredicted RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 HS6ST1O60243 411 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 LDB3O75112 727 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 H6PDO95479 791 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 IFNW1P05000 195 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CHRM4P08173 479 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SLC35E2P0CK97 266 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 RNH1P13489 461 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 PNLIPP16233 465 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 RHCEP18577 417 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 HMGA2P52926 109 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 MAPK10P53779 464 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CFHR1Q03591 330 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CSTF1Q05048 431 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 ANKRD34AQ69YU3 496 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 PRSS42Q7Z5A4 293 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CYP4Z1Q86W10 505 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 OR6C4Q8NGE1 309 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 OR4C15Q8NGM1 316 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 COL26A1Q96A83 441 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 ZC3H10Q96K80 434 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 ZNF354BQ96LW1 612 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 COL21A1Q96P44 957 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 TRNT1Q96Q11 434 aaKnown RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 PIP5K1AQ99755 562 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 YIPF4Q9BSR8 244 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SOX17Q9H6I2 414 aaPredicted RBP12.1□□□□□ -0.47
SNX1-211ENST00000560829 GIN1Q9NXP7 522 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 CALML5Q9NZT1 146 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 KCND3Q9UK17 655 aa12.1□□□□□ -0.47
SNX1-211ENST00000560829 SH3GLB1Q9Y371 365 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms