RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 LGSNQ5TDP6 509 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 TMEM198Q66K66 360 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 FAM180BQ6P0A1 224 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 B3GNT6Q6ZMB0 384 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 LIX1LQ8IVB5 337 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 DND1Q8IYX4 353 aaKnown RBP9.39□□□□□ -0.91
LDLR-214ENST00000560628 C1orf52Q8N6N3 182 aaKnown RBP9.39□□□□□ -0.91
LDLR-214ENST00000560628 ZNF441Q8N8Z8 693 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 ACBD4Q8NC06 268 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 ADCY4Q8NFM4 1077 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 ADIPOR1Q96A54 375 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 SARAFQ96BY9 339 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 TM4SF18Q96CE8 201 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 C14orf79Q96F83 325 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 BRINP2Q9C0B6 783 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 ZNF703Q9H7S9 590 aaPredicted RBP9.39□□□□□ -0.91
LDLR-214ENST00000560628 TMEM216Q9P0N5 145 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 Q9UFV3 132 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 BCAP29Q9UHQ4 241 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 ZNF225Q9UK10 706 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 CES1P1Q9UKY3 287 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 SNX6Q9UNH7 406 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 PCDHA9Q9Y5H5 950 aa9.39□□□□□ -0.91
LDLR-214ENST00000560628 CAPN14A8MX76 684 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GOLGA8RI6L899 631 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 MANBAO00462 879 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 TP53I11O14683 189 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 DLX3O60479 287 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GUCY1B2O75343 617 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 TRIM3O75382 744 aaPredicted RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 TRAPPC6AO75865 159 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 SUPT7LO94864 414 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 TAC1P20366 129 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 S1PR1P21453 382 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GDF1P27539 372 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 ALDH9A1P49189 494 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 DUSP2Q05923 314 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GALNT1Q10472 559 aaPredicted RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 TBL3Q12788 808 aaKnown RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 EXOSC7Q15024 291 aaKnown RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 NNATQ16517 81 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GGTA1PQ4G0N0 100 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 C10orf62Q5T681 223 aaPredicted RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 C1orf185Q5T7R7 199 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 C6orf163Q5TEZ5 329 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 DESI1Q6ICB0 168 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 SLC48A1Q6P1K1 146 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 TIFABQ6ZNK6 161 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 LRRC25Q8N386 305 aaPredicted RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 LIX1Q8N485 282 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 CDYL2Q8N8U2 506 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 SIMC1Q8NDZ2 872 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 MYRIPQ8NFW9 859 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 OR7G1Q8NGA0 311 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 NEIL3Q8TAT5 605 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 SPPL2AQ8TCT8 520 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 RILPQ96NA2 401 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 GNRHR2Q96P88 292 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 TREX2Q9BQ50 279 aaPredicted RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 NXF5Q9H1B4 397 aaKnown RBP9.38□□□□□ -0.91
LDLR-214ENST00000560628 MCCC2Q9HCC0 563 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 ACKR4Q9NPB9 350 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 DTX4Q9Y2E6 619 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 FBN2P35556 2912 aa9.38□□□□□ -0.91
LDLR-214ENST00000560628 APCP25054 2843 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 LRBAP50851 2863 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 C15orf38-AP3S2A0A0A6YYH1 394 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 C1orf226A1L170 272 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 ANKRD33BA6NCL7 494 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 C2orf72A6NCS6 295 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 GOLGA6L10A6NI86 522 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 WDR1O75083 606 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 ESRRBO95718 433 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 FAM153BP0C7A2 387 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 RHOXF2BP0C7M4 288 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 IGFBP2P18065 325 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 KRT15P19012 456 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 CSNK2A2P19784 350 aaPredicted RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 GPX3P22352 226 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 MSX1P28360 303 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 CASP3P42574 277 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 ZFP36L2P47974 494 aaKnown RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 MASP1P48740 699 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 WNT3P56703 355 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 NRG3P56975 720 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 BTKQ06187 659 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 MGAT2Q10469 447 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 MAP4K2Q12851 820 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 DUSP8Q13202 625 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 SNTB1Q13884 538 aaKnown RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 RPS6KA2Q15349 733 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 TOMM20Q15388 145 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 LTB4RQ15722 352 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 PRICKLE4Q2TBC4 344 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 FAM153CQ494X1 144 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 TRMT12Q53H54 448 aaKnown RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 ZNF678Q5SXM1 525 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 SCIMPQ6UWF3 145 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 GPRIN3Q6ZVF9 776 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms