RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	ITFG2	Q969R8	447 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	SNRNP40	Q96DI7	357 aa	Known RBP	2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	PIWIL1	Q96J94	861 aa	Known RBP	2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	NMUR2	Q9GZQ4	415 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	RNF41	Q9H4P4	317 aa	Predicted RBP	2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	TMED7	Q9Y3B3	224 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	EHBP1L1	Q8N3D4	1523 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	KDM5D	Q9BY66	1539 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	UGGT2	Q9NYU1	1516 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	GPRASP1	Q5JY77	1395 aa		2.71	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC171	Q6TFL3	1326 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	PTPRG	P23470	1445 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKRD50	Q9ULJ7	1429 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	SYCE3	A1L190	88 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	KIAA0513	O60268	411 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	IL11	P20809	199 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	RIPPLY3	P57055	190 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	LINC00315	P59091	139 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	LCP2	Q13094	533 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	CAMK2D	Q13557	499 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	WDR43	Q15061	677 aa	Known RBP eCLIP	2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZSCAN26	Q16670	478 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	KRBOX4	Q5JUW0	171 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC183	Q5T5S1	534 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	AGBL2	Q5U5Z8	902 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM219B	Q5XKK7	198 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	CASC1	Q6TDU7	716 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	SYT10	Q6XYQ8	523 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM43B	Q6ZT52	329 aa	Predicted RBP	2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKRD46	Q86W74	232 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	CRYGN	Q8WXF5	182 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	RIT1	Q92963	219 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	ST6GALNAC6	Q969X2	333 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	SGF29	Q96ES7	293 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	TEX13A	Q9BXU3	409 aa	Predicted RBP	2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM107B	Q9H098	131 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	NEU3	Q9UQ49	428 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	RRP15	Q9Y3B9	282 aa	Known RBP	2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	LAMC1	P11047	1609 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	CARMIL1	Q5VZK9	1371 aa		2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	SUPT6H	Q7KZ85	1726 aa	Known RBP	2.7	□□□□□ -1.98
VPS13C-208	ENST00000559119	PFAS	O15067	1338 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ERICH4	A6NGS2	130 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKDD1B	A6NHY2	528 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	CTAGE5	O15320	804 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	CSDE1	O75534	798 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	SERF1A	O75920	110 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	SLU7	O95391	586 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	MMP10	P09238	476 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PNMA6A	P0CW24	399 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	MX1	P20591	662 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PSMB1	P20618	241 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PTEN	P60484	403 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	TOMM20	Q15388	145 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	KYNU	Q16719	465 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM133B	Q5BKY9	247 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	MFSD4B	Q5TF39	518 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	SLC22A10	Q63ZE4	541 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ERN2	Q76MJ5	926 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	OTOA	Q7RTW8	1153 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	EFCAB13	Q8IY85	973 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	C10orf67	Q8IYJ2	551 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	H1FOO	Q8IZA3	346 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZNF444	Q8N0Y2	327 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC191	Q8NCU4	936 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKRD20A12P	Q8NF67	263 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	MRPL24	Q96A35	216 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ERP27	Q96DN0	273 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PAIP2	Q9BPZ3	127 aa	Known RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	SLF1	Q9BQI6	1058 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM129A	Q9BZQ8	928 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	LMAN1L	Q9HAT1	526 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	ARGLU1	Q9NWB6	273 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PYCARD	Q9ULZ3	195 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	CA5B	Q9Y2D0	317 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	PZP	P20742	1482 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	KIF21A	Q7Z4S6	1674 aa		2.69	□□□□□ -1.98
VPS13C-208	ENST00000559119	KDM6B	O15054	1643 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZNFX1	Q9P2E3	1918 aa	Known RBP	2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	IGLV3-16	A0A075B6K0	115 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	TSPY2	A6NKD2	308 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM86B1	E9PN63	330 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119		M0R296	226 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	TBX10	O75333	385 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	GOT2	P00505	430 aa	Known RBP	2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ADRB2	P07550	413 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC175	P0C221	793 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM86B2	P0C5J1	330 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	PDGFRA	P16234	1089 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	FKBP1B	P68106	108 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	UNC50	Q53HI1	259 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	PAGE2B	Q5JRK9	111 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ACER2	Q5QJU3	275 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	SHE	Q5VZ18	495 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	TMEM182	Q6ZP80	229 aa	Predicted RBP	2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	SPATA21	Q7Z572	469 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	LAX1	Q8IWV1	398 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	GPATCH11	Q8N954	259 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	OCC1	Q8TAD7	63 aa		2.68	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms