RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 LYRM4Q9HD34 91 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 GPATCH2Q9NW75 528 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 POMT2Q9UKY4 750 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MAP4K5Q9Y4K4 846 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 AXIN1O15169 862 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLC16A6O15403 523 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ASNA1O43681 348 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 DYRK3O43781 588 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 IFI6P09912 130 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SMIM10L1P0DMW3 83 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ACVR2AP27037 513 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CERS1P27544 350 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 UGT2B10P36537 528 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 DCTP40126 519 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CXCL12P48061 93 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 NCBP2P52298 156 aaKnown RBP eCLIP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PCBP3P57721 371 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 BTN3A2P78410 334 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PPP2R2BQ00005 443 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 TNFRSF17Q02223 184 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 EEF1A2Q05639 463 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CTF1Q16619 201 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 COX20Q5RI15 118 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF362Q5T0B9 420 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 OTUD3Q5T2D3 398 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PRAMEF8Q5VWM4 474 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PRAMEF7Q5VXH5 474 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FCRL6Q6DN72 434 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLC16A12Q6ZSM3 486 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 C6orf120Q7Z4R8 191 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 FAM20CQ8IXL6 584 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 MFSD4AQ8N468 514 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ARL10Q8N8L6 244 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 OR5AK3PQ8NH89 298 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 NFKBIDQ8NI38 313 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 UTP15Q8TED0 518 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SMIM10Q96HG1 83 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLC35G5Q96KT7 338 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 NODALQ96S42 347 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF607Q96SK3 696 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 EPYCQ99645 322 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SPATA5L1Q9BVQ7 753 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 AICDAQ9GZX7 198 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 NAA50Q9GZZ1 169 aaKnown RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 TCEAL2Q9H3H9 227 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SEMA6CQ9H3T2 930 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 ARMC7Q9H6L4 198 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLAMF7Q9NQ25 335 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 THSD1Q9NS62 852 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SIRT3Q9NTG7 399 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-229ENST00000557348 P2RX2Q9UBL9 471 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 TPRKBQ9Y3C4 175 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 PCDHGB3Q9Y5G1 929 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 SLC22A7Q9Y694 548 aa11.94□□□□□ -0.5
SHMT2-229ENST00000557348 A0A1W2PR48 441 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 CLDN24A6NM45 220 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 B4DGG1 531 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 IDH3BO43837 385 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 FHP07954 510 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 NUDT7P0C024 238 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF888P0CJ79 500 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-229ENST00000557348 ALOX12P18054 663 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 ZNF45Q02386 682 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 TCEA2Q15560 299 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 SLCO6A1Q86UG4 719 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 MMP21Q8N119 569 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 FAM160A2Q8N612 972 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-229ENST00000557348 BPIFB6Q8NFQ5 453 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 FCGR1BQ92637 280 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 TPD52L3Q96J77 140 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 MUS81Q96NY9 551 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 CCDC3Q9BQI4 270 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 GLIPR2Q9H4G4 154 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 RUBCNLQ9H714 662 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 C2orf42Q9NWW7 574 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 CALML5Q9NZT1 146 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 WARS2Q9UGM6 360 aaKnown RBP11.93□□□□□ -0.5
SHMT2-229ENST00000557348 FBXW2Q9UKT8 454 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 ACSL6Q9UKU0 697 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 CES1P1Q9UKY3 287 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 ATG4BQ9Y4P1 393 aa11.93□□□□□ -0.5
SHMT2-229ENST00000557348 CCDC163A0A0D9SF12 145 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 A0A0G2JN53 185 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 BLACEA4D250 179 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 LMO7DNF2Z398 122 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 SNAP29O95721 258 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 AGR2O95994 175 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 CPN2P22792 545 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 HOXA6P31267 233 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 MAPK10P53779 464 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 EPHA4P54764 986 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 NXPH1P58417 271 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 RAB8AP61006 207 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 KCNJ10P78508 379 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 SELENBP1Q13228 472 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 TP53BP2Q13625 1128 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 PRSS53Q2L4Q9 553 aa11.92□□□□□ -0.5
SHMT2-229ENST00000557348 SYT6Q5T7P8 510 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-229ENST00000557348 C11orf74Q86VG3 221 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms