RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 MUC21Q5SSG8 566 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 C9orf66Q5T8R8 295 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CDC42EP5Q6NZY7 148 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 NEK5Q6P3R8 708 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 GPR142Q7Z601 462 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ADAMTSL2Q86TH1 951 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 RNF130Q86XS8 419 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF619Q8N2I2 560 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CHCHD4Q8N4Q1 142 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 TMEM185AQ8NFB2 350 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 OR8H1Q8NGG4 311 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 FLVCR1-AS1Q8TAF5 88 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 PCNPQ8WW12 178 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SLC13A3Q8WWT9 602 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 TCP11Q8WWU5 503 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 NTNG2Q96CW9 530 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CDHR1Q96JP9 859 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 RPGRIP1Q96KN7 1286 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF597Q96LX8 424 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF285Q96NJ3 590 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 TNFRSF13CQ96RJ3 184 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CHCHD5Q9BSY4 110 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SPXQ9BT56 116 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 FUNDC2Q9BWH2 189 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 STRADBQ9C0K7 418 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 GDF3Q9NR23 364 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 STARD5Q9NSY2 213 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF446Q9NWS9 450 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 DNPEPQ9ULA0 475 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 RPH3AQ9Y2J0 694 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZMYM6O95789 1325 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 FAM205AQ6ZU69 1335 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 A0A0U1RRA0 63 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 TMEM89A2RUT3 159 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 MEI4A8MW99 385 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 EEF2KO00418 725 aaKnown RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 TXNL1O43396 289 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 GMNNO75496 209 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 REC8O95072 547 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ALPPP05187 535 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ALPPL2P10696 532 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF18P17022 549 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 LMO2P25791 158 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 MARCKSP29966 332 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 NDST1P52848 882 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 PEX3P56589 373 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 GALK2Q01415 458 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 PPP1R8Q12972 351 aaKnown RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 KLF5Q13887 457 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ECSCRQ19T08 205 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 GPAT3Q53EU6 434 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 LIPJQ5W064 366 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 OLFML2AQ68BL7 652 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 RTL6Q6ICC9 239 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 RAB12Q6IQ22 244 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 CCDC71Q8IV32 467 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF781Q8N8C0 355 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 MRPL43Q8N983 215 aaKnown RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 BANPQ8N9N5 519 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 CSNK1G2-AS1Q8NCQ2 148 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 OR1K1Q8NGR3 316 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ESAMQ96AP7 390 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 TMEM237Q96Q45 408 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 RUFY1Q96T51 708 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 TEX13BQ9BXU2 312 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 SIRPDQ9H106 197 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 NT5DC2Q9H857 520 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 JPT2Q9H910 190 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 SLC25A19Q9HC21 320 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 SYTL2Q9HCH5 934 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 GTSE1Q9NYZ3 720 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 VPS54Q9P1Q0 977 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 KCNN3Q9UGI6 736 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 FAM153AQ9UHL3 310 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 MOSPD1Q9UJG1 213 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 KLHDC2Q9Y2U9 406 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 STRAPQ9Y3F4 350 aaKnown RBP2.28□□□□□ -2.04
SCFD1-218ENST00000556256 ATG4BQ9Y4P1 393 aa2.28□□□□□ -2.04
SCFD1-218ENST00000556256 NEDD8-MDP1E9PL57 170 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 ATP6V1G1O75348 118 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SEC22BO75396 215 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SYNGR4O95473 234 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 RENP00797 406 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 IGHG3P01860 377 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SLC4A1P02730 911 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 PGK2P07205 417 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 APRTP07741 180 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 ZNF32P17041 273 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 PTPN4P29074 926 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SFNP31947 248 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 ATP6V1E1P36543 226 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 ID1P41134 155 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SLC1A4P43007 532 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 RIDAP52758 137 aaKnown RBP2.27□□□□□ -2.05
SCFD1-218ENST00000556256 SSTP61278 116 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 CDKL1Q00532 357 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 GAMTQ14353 236 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 HAGHQ16775 308 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 PCK2Q16822 640 aa2.27□□□□□ -2.05
SCFD1-218ENST00000556256 ZSWIM7Q19AV6 140 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms