RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SLC28A2O43868 658 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 MYCP01106 439 aaPredicted RBP16.6■□□□□ 0.25
SYNE3-202ENST00000553340 TIMP2P16035 220 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 SMSP52788 366 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 MAPK12P53778 367 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 CAV3P56539 151 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 CDK5Q00535 292 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 FABP5Q01469 135 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 HSPB3Q12988 150 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 DUSP6Q16828 381 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 TYW3Q6IPR3 259 aaKnown RBP16.6■□□□□ 0.25
SYNE3-202ENST00000553340 TECPR1Q7Z6L1 1165 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 OR4K5Q8NGD3 323 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 TRAV19A0A0A6YYK7 116 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 PRODHO43272 600 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 APOL3O95236 402 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 EPHX1P07099 455 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 GAS1P54826 345 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 P2RX3P56373 397 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 EFNB1P98172 346 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 SREBF2Q12772 1141 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 ARSIQ5FYB1 569 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 LRRC56Q8IYG6 542 aaPredicted RBP16.6■□□□□ 0.25
SYNE3-202ENST00000553340 PLA2G15Q8NCC3 412 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 FGF11Q92914 225 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 RNFT2Q96EX2 444 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 ZBED6CLQ96FA7 236 aaPredicted RBP16.6■□□□□ 0.25
SYNE3-202ENST00000553340 TREX2Q9BQ50 279 aaPredicted RBP16.6■□□□□ 0.25
SYNE3-202ENST00000553340 SOSTQ9BQB4 213 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 LRRTM2O43300 516 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 LYRM1O43325 122 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 SPOUT1Q5T280 376 aaKnown RBP16.59■□□□□ 0.25
SYNE3-202ENST00000553340 GLCCI1Q86VQ1 547 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 IQCHQ86VS3 1027 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 DEDD2Q8WXF8 326 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 SMPDL3AQ92484 453 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 SNAPC3Q92966 411 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF689Q96CS4 500 aaPredicted RBP16.59■□□□□ 0.25
SYNE3-202ENST00000553340 TRIM45Q9H8W5 580 aaPredicted RBP16.59■□□□□ 0.25
SYNE3-202ENST00000553340 NLKQ9UBE8 527 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 MALT1Q9UDY8 824 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 FBXW2Q9UKT8 454 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 CLCA3PQ9Y6N3 262 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 A0A0G2JMP0 313 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 M0R3H8 397 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 HPGDSO60760 199 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 IL18Q14116 193 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 WSCD2Q2TBF2 565 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 SLC36A4Q6YBV0 504 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 KRT78Q8N1N4 520 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 TBC1D19Q8N5T2 526 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 MED30Q96HR3 178 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 ABCG4Q9H172 646 aa16.59■□□□□ 0.25
SYNE3-202ENST00000553340 EXOSC1Q9Y3B2 195 aaKnown RBP16.59■□□□□ 0.25
SYNE3-202ENST00000553340 MYOFQ9NZM1 2061 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 TRDV1A0A1B0GX56 115 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 PLPP1O14494 284 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 PI15O43692 258 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 B4GALT2O60909 372 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 PTBP1P26599 531 aaKnown RBP eCLIP16.58■□□□□ 0.255e-11■■■■□ 20.2
SYNE3-202ENST00000553340 CLDN20P56880 219 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 P2RY14Q15391 338 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF658BQ4V348 819 aaPredicted RBP16.58■□□□□ 0.25
SYNE3-202ENST00000553340 C1orf94Q6P1W5 598 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 CD200R1LQ6Q8B3 271 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 LYPD8Q6UX82 237 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 TMEM25Q86YD3 366 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 ADGRF3Q8IZF5 1079 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 ANGPTL6Q8NI99 470 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 AUTS2Q8WXX7 1259 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 SLC9A6Q92581 669 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 TM4SF18Q96CE8 201 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 CITED4Q96RK1 184 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 TRAF4Q9BUZ4 470 aaPredicted RBP16.58■□□□□ 0.25
SYNE3-202ENST00000553340 SMG9Q9H0W8 520 aaKnown RBP16.58■□□□□ 0.25
SYNE3-202ENST00000553340 EPHX3Q9H6B9 360 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 P2RX2Q9UBL9 471 aa16.58■□□□□ 0.25
SYNE3-202ENST00000553340 TBX19O60806 448 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 RB1P06400 928 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 ELFN1P0C7U0 828 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 GSTM3P21266 225 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 MTNR1AP48039 350 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 INPP1P49441 399 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 SYPL1Q16563 259 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 FAM214AQ32MH5 1076 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 DPPA4Q7L190 304 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 TRMT11Q7Z4G4 463 aaKnown RBP16.58■□□□□ 0.24
SYNE3-202ENST00000553340 TMEM145Q8NBT3 493 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 SETD7Q8WTS6 366 aaKnown RBP16.58■□□□□ 0.24
SYNE3-202ENST00000553340 MYLIPQ8WY64 445 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 ARHGAP9Q9BRR9 750 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 SYNDIG1Q9H7V2 258 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 SIRT3Q9NTG7 399 aaPredicted RBP16.58■□□□□ 0.24
SYNE3-202ENST00000553340 SLC9A8Q9Y2E8 581 aa16.58■□□□□ 0.24
SYNE3-202ENST00000553340 NEDD8-MDP1E9PL57 170 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 ORC5O43913 435 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 OR2B3O76000 313 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 GJA1P17302 382 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 CCT3P49368 545 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 EVX1P49640 407 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms