RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SLC25A36Q96CQ1 311 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 CNRIP1Q96F85 164 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-209ENST00000553280 LRR1Q96L50 414 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 USP28Q96RU2 1077 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 LRRCC1Q9C099 1032 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 B3GAT2Q9NPZ5 323 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 BAIAP2L1Q9UHR4 511 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 ATP6V1HQ9UI12 483 aa4.27□□□□□ -1.73
SCFD1-209ENST00000553280 SYNJ2O15056 1496 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SYNJ2BP-COX16A0A087WUM0 186 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 NEDD8-MDP1E9PL57 170 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 CFLARO15519 480 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SPAG6O75602 509 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 GOT2P00505 430 aaKnown RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 AMBPP02760 352 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ASNSP08243 561 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 GSTA1P08263 222 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SELEP16581 610 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 DRD5P21918 477 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 PRKACGP22612 351 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 HNRNPA2B1P22626 353 aaKnown RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 OTX2P32243 289 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 TRIM23P36406 574 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ID1P41134 155 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 PPIAP62937 165 aaKnown RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 MLF2Q15773 248 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 MTHFSDQ2M296 383 aaKnown RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 DCAF4L1Q3SXM0 396 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SLC36A3Q495N2 470 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF311Q5JNZ3 666 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SLC39A4Q6P5W5 647 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 RGS9BPQ6ZS82 235 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 GRAMD2AQ8IUY3 354 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ZDHHC21Q8IVQ6 265 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ARFGAP2Q8N6H7 521 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ICA1LQ8NDH6 482 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 NUP37Q8NFH4 326 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 FAM76AQ8TAV0 307 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SLC5A11Q8WWX8 675 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 POLR1EQ9GZS1 481 aaKnown RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 WDR13Q9H1Z4 485 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 RPAP3Q9H6T3 665 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-209ENST00000553280 RMND5AQ9H871 391 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 IL1RAPQ9NPH3 570 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 TRPV5Q9NQA5 729 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 PLCXD1Q9NUJ7 323 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 GDAP2Q9NXN4 497 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 TMEM181Q9P2C4 612 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 ICAM5Q9UMF0 924 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 SNX6Q9UNH7 406 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 RNF115Q9Y4L5 304 aa4.26□□□□□ -1.73
SCFD1-209ENST00000553280 AFF2P51816 1311 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 LOC105371242A0A075B767 164 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 A0A0A6YYD4 124 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 CLRN2A0PK11 232 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF724A8MTY0 619 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 TMCO5BA8MYB1 307 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 G3V2L1 256 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 MPHOSPH10O00566 681 aaKnown RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 TBX19O60806 448 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ZFAND5O76080 213 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 CLDN1O95832 211 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 SLC35G4P0C7Q5 338 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 PDHA2P29803 388 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 MMP12P39900 470 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 SLC1A6P48664 564 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 NDST2P52849 883 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 RPS27AP62979 156 aaKnown RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ZNF177Q13360 481 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ENPP2Q13822 863 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 TRIP10Q15642 601 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 POM121L1PQ3SYA9 428 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 USH1GQ495M9 461 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 TCHHL1Q5QJ38 904 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 CBLN3Q6UW01 205 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 KIF6Q6ZMV9 814 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 FAM131BQ86XD5 332 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 UNC5CLQ8IV45 518 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 CCDC36Q8IYA8 594 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 PYROXD2Q8N2H3 581 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 NFAM1Q8NET5 270 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 OR4F5Q8NH21 305 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 PCNPQ8WW12 178 aaKnown RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 N4BP2L2Q92802 583 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 VSTM2LQ96N03 204 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ANKRD27Q96NW4 1050 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 TESK2Q96S53 571 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 CPXM1Q96SM3 734 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 DGCR6LQ9BY27 220 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 ALG9Q9H6U8 611 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 NIP7Q9Y221 180 aaKnown RBP eCLIP4.25□□□□□ -1.73
SCFD1-209ENST00000553280 FKBP7Q9Y680 259 aa4.25□□□□□ -1.73
SCFD1-209ENST00000553280 A0A087X002 238 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 MPTX1A8MV57 137 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 WASH3PC4AMC7 463 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 SDHDO14521 159 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 TRAFD1O14545 582 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-209ENST00000553280 GMFGO60234 142 aa4.24□□□□□ -1.73
SCFD1-209ENST00000553280 PRAMEF12O95522 483 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms