RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 LINC01560Q8TB33 94 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 NUBPLQ8TB37 319 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 SLC2A12Q8TD20 617 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 TMEM158Q8WZ71 300 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 SARAFQ96BY9 339 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 PHF21BQ96EK2 531 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 CMTM7Q96FZ5 175 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 MAPKAP1Q9BPZ7 522 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 MRPL57Q9BQC6 102 aaKnown RBP11.2□□□□□ -0.62
DDX54-206ENST00000549271 OR8D2Q9GZM6 311 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 L2HGDHQ9H9P8 463 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 ZBTB26Q9HCK0 441 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 SH2D2AQ9NP31 389 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 SACM1LQ9NTJ5 587 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 ADGRE2Q9UHX3 823 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 ACAD8Q9UKU7 415 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 ANGPTL3Q9Y5C1 460 aa11.2□□□□□ -0.62
DDX54-206ENST00000549271 H0YIV9 168 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 STX16-NPEPL1H3BU86 382 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 SAP18O00422 153 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 STX16O14662 325 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 UGDHO60701 494 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 HCN1O60741 890 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 CELA3AP09093 270 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 BMP7P18075 431 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 TNNI3P19429 210 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ENDOUP21128 410 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 HIST1H1TP22492 207 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 SERPINB1P30740 379 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 CEACAM8P31997 349 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 RPS13P62277 151 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 SORDQ00796 357 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 KRTAP1-1Q07627 177 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 TBL3Q12788 808 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 DDX39BQ13838 428 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 CPSF6Q16630 551 aaKnown RBP eCLIP11.19□□□□□ -0.62
DDX54-206ENST00000549271 AP5B1Q2VPB7 878 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ZNF791Q3KP31 576 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 OR4C11Q6IEV9 310 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 PODNL1Q6PEZ8 512 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 KIF18BQ86Y91 864 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 GSPT2Q8IYD1 628 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 SLC15A4Q8N697 577 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ZNF321PQ8N8H1 164 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 WDR20Q8TBZ3 569 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ZNF721Q8TF20 911 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ANKRD9Q96BM1 317 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 NSUN5Q96P11 429 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 MTERF1Q99551 399 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 YIPF4Q9BSR8 244 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 NTMT1Q9BV86 223 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 SORBS1Q9BX66 1292 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 ZNF717Q9BY31 904 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 NOL11Q9H8H0 719 aaKnown RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 ACTR8Q9H981 624 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 PSD3Q9NYI0 1048 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 XPR1Q9UBH6 696 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ZNF629Q9UEG4 869 aaPredicted RBP11.19□□□□□ -0.62
DDX54-206ENST00000549271 PCTPQ9UKL6 214 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 TMCO1Q9UM00 188 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 ATG4BQ9Y4P1 393 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 PCDHGB3Q9Y5G1 929 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 PCDHGA11Q9Y5H2 935 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 SPACA6W5XKT8 324 aa11.19□□□□□ -0.62
DDX54-206ENST00000549271 DSCAMO60469 2012 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 MYOCOSA0A1B0GUC4 107 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 PLPP1O14494 284 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 LDB3O75112 727 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 CLDN9O95484 217 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 ETHE1O95571 254 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 IGKV3-11P04433 115 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 P04436 131 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 COX7A2P14406 83 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 PTX3P26022 381 aaPredicted RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 STT3AP46977 705 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 PIK3CGP48736 1102 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 MAN2A2P49641 1150 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 NEK2P51955 445 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 ARFIP1P53367 373 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 SLC10A1Q14973 349 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 POU4F3Q15319 338 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 LGSNQ5TDP6 509 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 FAM47EQ6ZV65 393 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 RPS27LQ71UM5 84 aaKnown RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 MYLK4Q86YV6 388 aaPredicted RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 ULK2Q8IYT8 1036 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 DND1Q8IYX4 353 aaKnown RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 EIF1ADQ8N9N8 165 aaKnown RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 OR52B6Q8NGF0 335 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 PAQR8Q8TEZ7 354 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 MZB1Q8WU39 189 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 SMPDL3BQ92485 455 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 PIGTQ969N2 578 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 RGMAQ96B86 450 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 SENP5Q96HI0 755 aaPredicted RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 CDK15Q96Q40 435 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 SECISBP2Q96T21 854 aaKnown RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 MRPL46Q9H2W6 279 aaKnown RBP11.18□□□□□ -0.62
DDX54-206ENST00000549271 MS4A12Q9NXJ0 267 aa11.18□□□□□ -0.62
DDX54-206ENST00000549271 ALKBH4Q9NXW9 302 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms