RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 POMZP3Q6PJE2 187 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 CYP20A1Q6UW02 462 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 CMC1Q7Z7K0 106 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 PACS2Q86VP3 889 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 CDC20BQ86Y33 519 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 KIF18BQ86Y91 864 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 RNF175Q8N4F7 328 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 NAXEQ8NCW5 288 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 TNIP2Q8NFZ5 429 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 ANGPTL4Q9BY76 406 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 LIME1Q9H400 295 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 ACTR8Q9H981 624 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 CXorf21Q9HAI6 301 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 CBLCQ9ULV8 474 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 ACOT9Q9Y305 439 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 NPFFR2Q9Y5X5 522 aa11.78□□□□□ -0.52
PTCH1-218ENST00000548945 ARID1AO14497 2285 aa11.77□□□□□ -0.52
PTCH1-218ENST00000548945 TLN2Q9Y4G6 2542 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 A0A087X1B8 175 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 PRKRAO75569 313 aaKnown RBP11.77□□□□□ -0.53
PTCH1-218ENST00000548945 SEMA3DO95025 777 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 AIFM1O95831 613 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 IL18BPO95998 194 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 CTAGE8P0CG41 777 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 EPXP11678 715 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 STX2P32856 288 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 GMPRP36959 345 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 SORDQ00796 357 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 CAV1Q03135 178 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 ACAP2Q15057 778 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 PCBP2Q15366 365 aaKnown RBP eCLIP11.77□□□□□ -0.53
PTCH1-218ENST00000548945 FAM83EQ2M2I3 478 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 HLA-DQA1Q5Y7H0 255 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 PAMR1Q6UXH9 720 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 NUDT13Q86X67 352 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 MYLK4Q86YV6 388 aaPredicted RBP11.77□□□□□ -0.53
PTCH1-218ENST00000548945 CTAGE4Q8IX94 777 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 GALNT12Q8IXK2 581 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 CENPLQ8N0S6 344 aaPredicted RBP11.77□□□□□ -0.53
PTCH1-218ENST00000548945 PPM1NQ8N819 430 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 L3MBTL4Q8NA19 623 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 WDR20Q8TBZ3 569 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 SPPL2AQ8TCT8 520 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 NXNL1Q96CM4 212 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 NTNG2Q96CW9 530 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 RILPQ96NA2 401 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 DPH5Q9H2P9 285 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 CALHM2Q9HA72 323 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 DLL4Q9NR61 685 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 GRHL1Q9NZI5 618 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 FETUBQ9UGM5 382 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 C15orf41Q9Y2V0 281 aa11.77□□□□□ -0.53
PTCH1-218ENST00000548945 TNPO3Q9Y5L0 923 aaKnown RBP11.77□□□□□ -0.53
PTCH1-218ENST00000548945 MBD3L4A6NDZ8 208 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 MBD3L3A6NE82 208 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 MBD3L5A6NJ08 208 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 GLOD5A6NK44 160 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 WASHC1A8K0Z3 465 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 TRAPPC6AO75865 159 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 LRATO95237 230 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 GFAPP14136 432 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 NAGAP17050 411 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 HOXB4P17483 251 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 PIK3R1P27986 724 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 OPRM1P35372 400 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 CASP3P42574 277 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 MASP1P48740 699 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 ZNF136P52737 540 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 DGKQP52824 942 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 FBXW4P57775 412 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 FOXD4Q12950 439 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 SNTB1Q13884 538 aaKnown RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 GTF2H2Q13888 395 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 CPSF6Q16630 551 aaKnown RBP eCLIP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 PFKFB4Q16877 469 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 C10orf62Q5T681 223 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 FNDC7Q5VTL7 733 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 GTF2H2CQ6P1K8 395 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 TMEM81Q6P7N7 255 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 ZNF572Q7Z3I7 529 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 ZNF615Q8N8J6 731 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 OR7G1Q8NGA0 311 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 MBD3L2Q8NHZ7 208 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-218ENST00000548945 DOK4Q8TEW6 326 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 ADIPOR1Q96A54 375 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 TMEM41AQ96HV5 264 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 SERPINI1Q99574 410 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 IPPKQ9H8X2 491 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 PLEKHA6Q9Y2H5 1048 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 ZANQ9Y493 2812 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 JMJD1CQ15652 2540 aa11.76□□□□□ -0.53
PTCH1-218ENST00000548945 TUBAL3A6NHL2 446 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 PGRMC2O15173 223 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 RAD51CO43502 376 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 ACSL3O95573 720 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 RAF1P04049 648 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 TACR1P25103 407 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 CTSSP25774 331 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 SSTR4P31391 388 aa11.75□□□□□ -0.53
PTCH1-218ENST00000548945 C6orf163Q5TEZ5 329 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms