RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 KDM4EB2RXH2 506 aaPredicted RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 PGRMC2O15173 223 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 KLHL2O95198 593 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SIX3O95343 332 aaPredicted RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 AIFM1O95831 613 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 GBAP04062 536 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 CT62P0C5K7 136 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 FAM58BPP0C7Q3 252 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SLC35E2P0CK97 266 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 NR2F6P10588 404 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 GABRA1P14867 456 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SERPINB3P29508 390 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SSTR4P31391 388 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 GALNSP34059 522 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 BUD31P41223 144 aaPredicted RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 TRPC1P48995 793 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 ARFIP1P53367 373 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 ALDH18A1P54886 795 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 CAV1Q03135 178 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 TNP2Q05952 138 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 MYBPHQ13203 477 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 NAB1Q13506 487 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 CUL3Q13618 768 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 GTF2H2Q13888 395 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 ACAP2Q15057 778 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 PCBP2Q15366 365 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP28-215ENST00000545608 NTRK2Q16620 822 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 FAM83EQ2M2I3 478 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 UBAP2Q5T6F2 1119 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 RIPPLY2Q5TAB7 128 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 GTF2H2CQ6P1K8 395 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 CYP20A1Q6UW02 462 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SLC29A4Q7RTT9 530 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 WDR53Q7Z5U6 358 aaPredicted RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 PLD6Q8N2A8 252 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 ZNF441Q8N8Z8 693 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 L3MBTL4Q8NA19 623 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 NEIL3Q8TAT5 605 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 PELOQ9BRX2 385 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 RAB17Q9H0T7 212 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 IPPKQ9H8X2 491 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 ACKR4Q9NPB9 350 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SNX15Q9NRS6 342 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP28-215ENST00000545608 LYARQ9NX58 379 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 PSD3Q9NYI0 1048 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 CNIH4Q9P003 139 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 CPSF2Q9P2I0 782 aaKnown RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 BOKQ9UMX3 212 aaPredicted RBP7.77□□□□□ -1.17
USP28-215ENST00000545608 C2CD3Q4AC94 2353 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 EML6Q6ZMW3 1958 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 HCFC1P51610 2035 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 CSMD2Q7Z408 3487 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 C2orf92A0A1B0GVN3 265 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ESYT3A0FGR9 886 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 SLC35F4A4IF30 521 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 OR6C76A6NM76 312 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 FOXE1O00358 373 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 OR7A17O14581 309 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 UGDHO60701 494 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TRIM3O75382 744 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 ACSL3O95573 720 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ALDOAP04075 364 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 TYK2P29597 1187 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 CASQ1P31415 396 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 DNAJA1P31689 397 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 ART1P52961 327 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 IST1P53990 364 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 WNT3P56703 355 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 FBXW4P57775 412 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 PHEXP78562 749 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 SLC7A5Q01650 507 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TBL3Q12788 808 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 DUSP8Q13202 625 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 UAP1Q16222 522 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 SLC25A35Q3KQZ1 300 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TECRLQ5HYJ1 363 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 BICRALQ6AI39 1079 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ARSKQ6UWY0 536 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 CCDC91Q7Z6B0 441 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 NUDT13Q86X67 352 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ZZZ3Q8IYH5 903 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ULK2Q8IYT8 1036 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 DND1Q8IYX4 353 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 TAGAPQ8N103 731 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 C17orf53Q8N3J3 647 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 ZNF615Q8N8J6 731 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 PTGR2Q8N8N7 351 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 NAXEQ8NCW5 288 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 OR52B6Q8NGF0 335 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 SPPL2AQ8TCT8 520 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 DIO2Q92813 273 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 ADIPOR1Q96A54 375 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TP53INP1Q96A56 240 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 REPS1Q96D71 796 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 DOHHQ9BU89 302 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 VPS11Q9H270 941 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 NOL11Q9H8H0 719 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 WDR41Q9HAD4 459 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 CXorf21Q9HAI6 301 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms