RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ACOT12Q8WYK0 555 aa5□□□□□ -1.61
USP28-213ENST00000544967 FBXW5Q969U6 566 aa5□□□□□ -1.61
USP28-213ENST00000544967 TCEAL4Q96EI5 215 aa5□□□□□ -1.61
USP28-213ENST00000544967 LCORQ96JN0 433 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 LRRC3BQ96PB8 259 aa5□□□□□ -1.61
USP28-213ENST00000544967 BARHL1Q9BZE3 327 aa5□□□□□ -1.61
USP28-213ENST00000544967 MIR1-1HGQ9H1L0 117 aa5□□□□□ -1.61
USP28-213ENST00000544967 ACTL8Q9H568 366 aa5□□□□□ -1.61
USP28-213ENST00000544967 CLMPQ9H6B4 373 aa5□□□□□ -1.61
USP28-213ENST00000544967 GLOD4Q9HC38 313 aa5□□□□□ -1.61
USP28-213ENST00000544967 PRDM6Q9NQX0 595 aa5□□□□□ -1.61
USP28-213ENST00000544967 CD274Q9NZQ7 290 aa5□□□□□ -1.61
USP28-213ENST00000544967 SCP2D1Q9UJQ7 156 aa5□□□□□ -1.61
USP28-213ENST00000544967 PCTPQ9UKL6 214 aa5□□□□□ -1.61
USP28-213ENST00000544967 BAIAP2Q9UQB8 552 aa5□□□□□ -1.61
USP28-213ENST00000544967 SLC27A6Q9Y2P4 619 aa5□□□□□ -1.61
USP28-213ENST00000544967 MED16Q9Y2X0 877 aa5□□□□□ -1.61
USP28-213ENST00000544967 U3KQV3 271 aa5□□□□□ -1.61
USP28-213ENST00000544967 COL6A3P12111 3177 aa5□□□□□ -1.61
USP28-213ENST00000544967 TP53BP1Q12888 1972 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 A0A1W2PPL8 197 aa5□□□□□ -1.61
USP28-213ENST00000544967 LRRC14BA6NHZ5 514 aa5□□□□□ -1.61
USP28-213ENST00000544967 INMT-MINDY4F8WBC2 141 aa5□□□□□ -1.61
USP28-213ENST00000544967 SLC28A1O00337 649 aa5□□□□□ -1.61
USP28-213ENST00000544967 ADAMDEC1O15204 470 aa5□□□□□ -1.61
USP28-213ENST00000544967 MITFO75030 526 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 CRCPO75575 148 aa5□□□□□ -1.61
USP28-213ENST00000544967 S1PR4O95977 384 aa5□□□□□ -1.61
USP28-213ENST00000544967 SERPINA1P01009 418 aa5□□□□□ -1.61
USP28-213ENST00000544967 PTHP01270 115 aa5□□□□□ -1.61
USP28-213ENST00000544967 ERCC2P18074 760 aa5□□□□□ -1.61
USP28-213ENST00000544967 PRPH2P23942 346 aa5□□□□□ -1.61
USP28-213ENST00000544967 STOMP27105 288 aa5□□□□□ -1.61
USP28-213ENST00000544967 SLC6A1P30531 599 aa5□□□□□ -1.61
USP28-213ENST00000544967 CRYBB2P43320 205 aa5□□□□□ -1.61
USP28-213ENST00000544967 HK3P52790 923 aa5□□□□□ -1.61
USP28-213ENST00000544967 PLK1P53350 603 aa5□□□□□ -1.61
USP28-213ENST00000544967 ZXDAP98168 799 aa5□□□□□ -1.61
USP28-213ENST00000544967 ZNF91Q05481 1191 aa5□□□□□ -1.61
USP28-213ENST00000544967 CTBP1Q13363 440 aa5□□□□□ -1.61
USP28-213ENST00000544967 EXOSC2Q13868 293 aaKnown RBP5□□□□□ -1.61
USP28-213ENST00000544967 DOC2AQ14183 400 aa5□□□□□ -1.61
USP28-213ENST00000544967 ZNF460Q14592 562 aa5□□□□□ -1.61
USP28-213ENST00000544967 PCBP2Q15366 365 aaKnown RBP eCLIP5□□□□□ -1.61
USP28-213ENST00000544967 IQCCQ4KMZ1 466 aa5□□□□□ -1.61
USP28-213ENST00000544967 ARHGAP15Q53QZ3 475 aa5□□□□□ -1.61
USP28-213ENST00000544967 CARD16Q5EG05 197 aa5□□□□□ -1.61
USP28-213ENST00000544967 C3orf38Q5JPI3 329 aa5□□□□□ -1.61
USP28-213ENST00000544967 C6orf132Q5T0Z8 1188 aa5□□□□□ -1.61
USP28-213ENST00000544967 FAM182AQ5T1J6 154 aa5□□□□□ -1.61
USP28-213ENST00000544967 ESRP1Q6NXG1 681 aaKnown RBP5□□□□□ -1.61
USP28-213ENST00000544967 PGAP1Q75T13 922 aa5□□□□□ -1.61
USP28-213ENST00000544967 MSRB3Q8IXL7 192 aa5□□□□□ -1.61
USP28-213ENST00000544967 CMIPQ8IY22 773 aa5□□□□□ -1.61
USP28-213ENST00000544967 HS3ST5Q8IZT8 346 aa5□□□□□ -1.61
USP28-213ENST00000544967 FBXO39Q8N4B4 442 aa5□□□□□ -1.61
USP28-213ENST00000544967 OR2T11Q8NH01 316 aa5□□□□□ -1.61
USP28-213ENST00000544967 ATOH1Q92858 354 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 PHF21BQ96EK2 531 aa5□□□□□ -1.61
USP28-213ENST00000544967 ZC3H10Q96K80 434 aaKnown RBP5□□□□□ -1.61
USP28-213ENST00000544967 MRGPRX2Q96LB1 330 aa5□□□□□ -1.61
USP28-213ENST00000544967 TRIB3Q96RU7 358 aa5□□□□□ -1.61
USP28-213ENST00000544967 WACQ9BTA9 647 aa5□□□□□ -1.61
USP28-213ENST00000544967 MND1Q9BWT6 205 aa5□□□□□ -1.61
USP28-213ENST00000544967 ALG9Q9H6U8 611 aa5□□□□□ -1.61
USP28-213ENST00000544967 UCKL1Q9NWZ5 548 aa5□□□□□ -1.61
USP28-213ENST00000544967 VNN3Q9NY84 501 aa5□□□□□ -1.61
USP28-213ENST00000544967 VAPAQ9P0L0 249 aa5□□□□□ -1.61
USP28-213ENST00000544967 GPN3Q9UHW5 284 aaPredicted RBP5□□□□□ -1.61
USP28-213ENST00000544967 SSR3Q9UNL2 185 aa5□□□□□ -1.61
USP28-213ENST00000544967 ZFR2Q9UPR6 939 aaKnown RBP5□□□□□ -1.61
USP28-213ENST00000544967 MEIKINA0A087WXM9 373 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TRAV19A0A0A6YYK7 116 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LOC100506127A0A0U1RQW1 187 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 DRGXA6NNA5 263 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 DLL1O00548 723 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PCDH17O14917 1159 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SIGLEC6O43699 453 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 PMPCBO75439 489 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ACSM4P0C7M7 580 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 LINC00032P0C843 101 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MAGP20916 626 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TLX1P31314 330 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 ADRA1BP35368 520 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 RPS19P39019 145 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 MMP12P39900 470 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 RAB13P51153 203 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 AFF3P51826 1226 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 PSMD4P55036 377 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 FOXA1P55317 472 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 MTPNP58546 118 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 DBPQ10586 325 aaPredicted RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 TAF10Q12962 218 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 TEAD2Q15562 447 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ZNF124Q15973 351 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 USP39Q53GS9 565 aaKnown RBP4.99□□□□□ -1.61
USP28-213ENST00000544967 PLA1AQ53H76 456 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 SPIN4Q56A73 249 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ALG1LQ6GMV1 187 aa4.99□□□□□ -1.61
USP28-213ENST00000544967 ZNF783Q6ZMS7 281 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms